PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G458728_P03 | ||||||||
Common Name | LOC103654617, ZEAMMB73_236071, Zm.24766 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 671aa MW: 69914.6 Da PI: 6.514 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 378 | 415 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + GRMZM2G458728_P03 378 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 415 664459******************************88 PP | |||||||
2 | BELL | 116.9 | 9.7e-38 | 239 | 310 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk+kLl++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia+q+ GRMZM2G458728_P03 239 ERQEMQMKKSKLLNMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIASQV 310 79********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-58 | 159 | 308 | IPR006563 | POX domain |
Pfam | PF07526 | 7.3E-49 | 164 | 307 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.969 | 356 | 419 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 359 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.67E-13 | 359 | 420 | No hit | No description |
SuperFamily | SSF46689 | 3.98E-17 | 361 | 425 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-29 | 362 | 425 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 376 | 415 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MAAYYHGGAG TDIQASTDGL QTLYLMNPSY AGGYADDGGA STPGAANMML LNSAVTTMTP 60 ASFAHHHQQQ SPPAAQQHFV GIPLQVQAPP PSGYNLWTPA MAGGAADMSP QAQAQTPGAA 120 GAAGVSAVLS LSSREAPPVT VAAVAACTDE GKYLGVSATP QGQMVMSSKY LKAAQELLDE 180 VVSVSKGVED AKTAAAAATK SLAAVKKKED SEGASGGGTD DGAGAKSGGG AAPEMSTAER 240 QEMQMKKSKL LNMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTISRQFR 300 CLRDAIASQV RAASRALGED ADAAVAGGRT VGSRLRYIDH QLRQQRALQQ LGMMQGGAWR 360 PQRGLPERSV SILRAWLFEH FLHPYPKDSD KIMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYLEETK DQDAGGGGND EGKSGGGGSK SSDTVDGVMP RADVMSKSAV RVGGGGAGAE 480 SASTNKGIHG SSLLELGGGD HQQSHAGFYD DDEDDGDDVM GRRLKKARGN EPAPAFHHVH 540 DIATLHAQAA AAARQQHEEV SHRELLMKFM ESGGGGGVRD HHQDGGGYSL FAPGPYGQFT 600 TEPFAFAGNG GVSLTLGLPH GAGGSAEQTA SFLMGSTTAG DSGSHGAATS YDMNMQSTKS 660 FAAQLMRDFV A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 365 | 423 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 365 | 423 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24766 | 0.0 | aerial organ| embryo| endosperm| meristem| ovary| sheath |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G458728 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G458728_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086092 | 0.0 | BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344816.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_008679683.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Refseq | XP_008679685.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Refseq | XP_020408426.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Swissprot | Q9SJ56 | 1e-110 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | K7UPH8 | 0.0 | K7UPH8_MAIZE; Putative POX domain/homeobox DNA-binding domain family protein | ||||
STRING | GRMZM2G458728_P04 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 2e-78 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G458728_P03 |
Entrez Gene | 103654617 |
Publications ? help Back to Top | |||
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