PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G453571_P01
Common NameLOC103630738, Zm.11587
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 408aa    MW: 42835.6 Da    PI: 7.0071
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G453571_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.1e-33187244259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  GRMZM2G453571_P01 187 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 244
                        8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-35171246IPR003657WRKY domain
SuperFamilySSF1182903.4E-29178246IPR003657WRKY domain
PROSITE profilePS5081131.95181246IPR003657WRKY domain
SMARTSM007743.2E-39186245IPR003657WRKY domain
PfamPF031063.0E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSGARHDHHM LSGDFVSHDE LAAMFEHQRA DAAPPATQQP WFMDYLHAVA SPLDCDAFVS  60
GFDDVPPTVD EIVKRELLVD TAATGGAGAT TTAPLTPNSM SMSSTSSEAC GAGAGEELAT  120
AGKSKKEEGD GEGFESKDGD AAAAKGDAQG QEKSKKGAAN KGKVKGEKRP RQPRFAFMTK  180
SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTTQKCPVK KRVERSYQDA AVVITTYEGK  240
HTHPIPATLR GSTHLLAASA HHPMSGLHHH HHLRVPAALG GANDAFDALG LLQQQAHHHG  300
AVMQQLMAAV GGDGGAGLQQ VNAAAMSGHV ALAADDQHGW AAAIAGVGAA AGGSTTATAT  360
AAAATPAAAA SAPLRMQHFM AQDYAGLLQD MFPPFVHSSD GGHHHHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26177247878Probable WRKY transcription factor 4
2lex_A1e-26177247878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G453571
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G453571_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016651e-128FP101665.1 Phyllostachys edulis cDNA clone: bphyem202m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650015.10.0WRKY transcription factor WRKY51
TrEMBLA0A1D6MCY10.0A0A1D6MCY1_MAIZE; Putative WRKY DNA-binding domain superfamily protein
TrEMBLA0A3L6EFF80.0A0A3L6EFF8_MAIZE; Putative WRKY transcription factor 71
STRINGGRMZM2G453571_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-48WRKY DNA-binding protein 71