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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G452996_P01 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 423aa MW: 46810.6 Da PI: 8.0097 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G452996_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 25.6 | 2.3e-08 | 391 | 417 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
HLH 4 ahnerErrRRdriNsafeeLrellPka 30
hn ErrRRdri++++ L+el+P++
GRMZM2G452996_P01 391 VHNLSERRRRDRIKEKMRVLQELIPHC 417
6************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MACRGRWVAG PIFATTGRGE EEATGLPSDV PRDHFAVYVG ERRRRFVVPI TLLDRPEFRY 60 LLRRAKEEFT SVGGALILPC EEVAFHSLTS ALACARRGDV LHRVIGILTR WTAIRGPQRR 120 VRRSPSCKDS VSPFTPTHKI SLLSCPLVDC ACSLQWRPHR SPDDDLVELL WHNGSVVAQP 180 QAHHRPAPPS DRDPLGTNDI TAEETAAWFP DTLDDPLEKD LYTQLWYSTI ADAAPQHEGT 240 FPGPTSHPSP PLPPVGSSNV ESSWAGDICS TFCGSNQVPR TPTGIRGKDA ALQSEVPSGV 300 GAHDGTSSSG GSGSNYGGSG LPSDSVHGHK RKGMCRDESD SRSEKIESKY RCLSGIELMR 360 KLQDVECEES TEETKPWQRN GPKRRTRAAE VHNLSERRRR DRIKEKMRVL QELIPHCNKV 420 QVP
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 40 | 45 | ERRRRF |
2 | 382 | 399 | KRRTRAAEVHNLSERRRR |
3 | 395 | 400 | ERRRRD |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] - Todaka D, et al.
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]
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