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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G452178_P01 |
| Common Name | gn1, gnarley1, HB61, LOC100283277 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
TALE |
| Protein Properties |
Length: 360aa MW: 39215 Da PI: 6.6823 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G452178_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.5 | 1.3e-09 | 283 | 318 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+ +gL+++q+ +WF N+R ++
GRMZM2G452178_P01 283 YKWPYPSETEKIALAEATGLDQKQINNWFINQRKRH 318
4679*****************************885 PP
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| 2 | ELK | 37.8 | 4.1e-13 | 238 | 259 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLl+KYsgyL+sL+qEFs
GRMZM2G452178_P01 238 ELKYQLLKKYSGYLSSLRQEFS 259
9********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MDQNFGNLGT GAGSSGGCGG SNSNSKAVAA VSSSSFLQLP LSTAAAASPA YYGAPLALLH 60
HGTTAGPSSS QQQQHQSPYA KHGAEMSAAE ADAIKAKIVA HPQYSALLAA YLDCQKVGAP 120
PDLLERLTAM AAKLDARPPG RHGPRDPELD QFMEAYCNML VKYREELTRP IDEAMEFLKR 180
VEAQLDSIAG GGSSSSARLS LADGKSSEGA GSSEDDDMDP SGRENEPPEI DPRAEDKELK 240
YQLLKKYSGY LSSLRQEFSK KKKKGKLPKE ARQKLLHWWE LHYKWPYPSE TEKIALAEAT 300
GLDQKQINNW FINQRKRHWK PSEDMPFVMM EGFHPQTAAA LYLDGGAFMA DGMTTYRLGS
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after pollination (DAP) in the ventral and basal part of the embryo including the initial of the shoot apical meristem (SAM). At 5 DAP, expressed at the ventral side of the embryo, but the expression within SAM is down-regulated. At 7 DAP, expression is restricted to the boundaries between the embryonic organs, between the scutellum and the coleoptile, the coleoptile and the second leaf primordium, the shoot apical meristem and the first leaf primordium, the first leaf primordium and the coleoptile, the coleoptile and the epiblast and at the tip of the epiblast, but not in the leaf primordia. {ECO:0000269|PubMed:10080693}. |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the embryo at 4 days after pollination (DAP) in the ventral and basal part of the embryo, including the initial of the shoot apical meristem (SAM). At 5 DAP, expressed at the ventral side of the embryo, but the expression within SAM is down-regulated. At 7 DAP, expression is restricted to the boundaries between the embryonic organs, between the scutellum and the coleoptile, the coleoptile and the second leaf primordium, the shoot apical meristem and the first leaf primordium, the first leaf primordium and the coleoptile, the coleoptile and the epiblast and at the tip of the epiblast, but not in the leaf primordia. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10095070, ECO:0000269|PubMed:9869405}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in stems, rachis and inflorescence. {ECO:0000269|PubMed:9869405}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU964124 | 0.0 | EU964124.1 Zea mays clone 276087 homeobox protein rough sheath 1 mRNA, complete cds. |
| Publications
? help Back to Top |
- Sato Y, et al.
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
EMBO J., 1999. 18(4): p. 992-1002
[PMID:10022841] - Ito Y,Eiguchi M,Kurata N
KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
Genesis, 2001. 30(4): p. 231-8
[PMID:11536429] - Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
Plant Cell, 2001. 13(9): p. 2085-98
[PMID:11549765] - Postma-Haarsma AD, et al.
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
Plant Mol. Biol., 2002. 48(4): p. 423-41
[PMID:11908517] - Kuijt SJ, et al.
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
Plant Mol. Biol., 2004. 55(6): p. 781-96
[PMID:15604716] - Alexandrov NN, et al.
Insights into corn genes derived from large-scale cDNA sequencing.
Plant Mol. Biol., 2009. 69(1-2): p. 179-94
[PMID:18937034] - Yin H, et al.
SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
Planta, 2013. 237(1): p. 15-27
[PMID:22956125]
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