PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G441115_P01 | ||||||||
Common Name | ZEAMMB73_170114 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 289aa MW: 32005.8 Da PI: 6.5695 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.3e-22 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr gilKKA+ELS+LCd++ +i+fs+t+k GRMZM2G441115_P01 9 KRLENNSGRQVTYSKRRSGILKKAKELSILCDIDLMLIMFSPTDK 53 789***************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.572 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.72E-25 | 2 | 54 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-25 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-19 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGRVKLKIKR LENNSGRQVT YSKRRSGILK KAKELSILCD IDLMLIMFSP TDKPTICIGD 60 RSTLEEVVAK YTQLTPQERA KRVQTVEGNF GKQHLIGLQY AATQFQTDMQ LPLGLPGESG 120 PSSWFQNGGA DGQQAMMLTD ESGLLHQRDI AQGYPSYFST VKQDPDTGGS SSDHGQVVLH 180 HPQPPDFSQT ECLTSLHLPS QQFPYPPFDH HGLYSDRIFR PDAVELHAGG VASMDFLSGQ 240 YDLPRPGDDA SFHNWASAAA CSATMFDQQQ QQQHQHHQQP QSSPAQVSA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G441115 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G441115_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008677900.1 | 1e-136 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_008677901.1 | 1e-136 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
TrEMBL | A0A1D6PNS2 | 1e-134 | A0A1D6PNS2_MAIZE; Putative MADS-box transcription factor family protein | ||||
STRING | GRMZM2G441115_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Representative plant | OGRP5946 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 3e-37 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G441115_P01 |