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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GRMZM2G437460_P02 |
| Common Name | pco123854 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
ARF |
| Protein Properties |
Length: 698aa MW: 77011.7 Da PI: 7.1852 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G437460_P02 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 76.1 | 4e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +
GRMZM2G437460_P02 147 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNRKKLISGDAVLFL--R 235
99****************************963.3445679************************************************..3 PP
SSEE..EEEEE-S CS
B3 87 rsefelvvkvfrk 99
+++ l+++v+r+
GRMZM2G437460_P02 236 GEDGVLRLGVRRA 248
4899899999986 PP
|
| 2 | Auxin_resp | 103.5 | 2.5e-34 | 273 | 353 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
+a+a++tk+vF+++YnPr ++seF+v+++k+ +++++++svGmR +m++e++d+serr++G+++g +++dp W +SkW++L
GRMZM2G437460_P02 273 VAQAVATKTVFHIYYNPRLTQSEFIVPYWKFTRSFNQPISVGMRCRMRYESDDASERRCTGIIIGSREADP-IWYGSKWKCL 353
6899*******************************************************************.8********9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 698 aa
Download sequence Send
to blast |
MAGIDLNTVE EEDEEEAEAL PLPGPGGRGA VCLELWHACA GPVPPLPRKG SAVVYLPQGH 60
LEHIGGDAAR GAAASAVPPH VLCRVVDVTL HADGATDEVY ARVSLLPEDE DAEKRAQAQA 120
RVREDEDRRD GEDGGAMRPL ARTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSQ 180
QRPSQELVAK DLHGTEWKFR HIYRGQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGEDGV 240
LRLGVRRAAQ LKIVTPIPAP HNQCSSNSNL GNVAQAVATK TVFHIYYNPR LTQSEFIVPY 300
WKFTRSFNQP ISVGMRCRMR YESDDASERR CTGIIIGSRE ADPIWYGSKW KCLVVRWDDG 360
IECRWPNRVS PWEIELTGSV SGSQMCAPSS KRLKPCLPQV NPEIVLPNGS VSSDFAGSAR 420
FHKVLQGQEL LGFKTHDGPA ISASQATEAR NLQYSDERSN NNLGIPRLGV RSPTGIPGFP 480
YHCSGFGESQ RFQKVLQGQE VFHPFRGGCL ADGHIRTAGM YQPDGRHVSG AAYKWSAPQG 540
YDFPQPAKPV FLLQESSPSS VMMFPQTRSK ITHLEYEYSR HEDGRLDRTV PTQDMGRSNQ 600
TLSLWPHLVS GEAIEECTGT VNMHSPVSGA EHESNNESTV ENGCKIFGIS LAEKIRSCDE 660
ADSCSAKCNS RLQPLKSQMP KSLGSCWATV SALYYLFY
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Zm.12234 | 0.0 | aerial organ| aleurone| ear| embryo| endosperm| meristem| root| sheath| shoot |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT069005 | 0.0 | BT069005.1 Zea mays full-length cDNA clone ZM_BFb0119L19 mRNA, complete cds. |
| GenBank | JX428508 | 0.0 | JX428508.1 Zea mays subsp. mays clone pUT3106 ARF12 ARF type transcription factor mRNA, partial cds. |
