PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G435015_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 279aa MW: 30963.9 Da PI: 5.4411 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.3e-09 | 64 | 107 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N +++ L++++Pk + K++ +iL +++Y+k+L GRMZM2G435015_P01 64 LMAERRRRKRLNGRLSMLQSVVPKiN------KMDWTSILGDTIDYMKEL 107 589*********************77......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.935 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-15 | 62 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-7 | 64 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 65 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGFLDVVKPK VASAALVDDA AGLEACKVEP DLEESGVAFG AGAAPPPALA SKKKRVVGMS 60 SKNLMAERRR RKRLNGRLSM LQSVVPKINK MDWTSILGDT IDYMKELLER IKLLQEEIGQ 120 QQQEASGMLS VFYELNPNEM VARNTPRREM SYGGNLMLWN SKKSLDFHRS EPCFLAVARR 180 HSVMLLSALL GLYITQVVCL EGIHSCDQVL VCDLPCWFDW AFGPGESCVV ISSLNYHLGD 240 LHLNVEVLED IGILKIPFTQ LKEEELDGPA TAAAEREQM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 72 | KKRVVGMSSKNLMAERRRRKR |
2 | 66 | 73 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.137068 | 1e-167 | ear| embryo | ||||
Zm.79109 | 1e-167 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G435015 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G435015_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT023986 | 1e-164 | BT023986.1 Zea mays clone EL01N0413D04 mRNA sequence. | |||
GenBank | BT042911 | 1e-164 | BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds. | |||
GenBank | EU963538 | 1e-164 | EU963538.1 Zea mays clone 263876 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142220.1 | 8e-52 | uncharacterized LOC100274388 | ||||
TrEMBL | A0A1D6I8R3 | 1e-115 | A0A1D6I8R3_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A1D6I8R4 | 1e-115 | A0A1D6I8R4_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G435015_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 6e-22 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G435015_P01 |