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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G428470_P01 |
Common Name | LOC100276948, ZEAMMB73_399432 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
Trihelix |
Protein Properties |
Length: 318aa MW: 33599.9 Da PI: 9.5516 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G428470_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 69.8 | 5.1e-22 | 58 | 147 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+Wt++e+laLiea+r+++e+l++g+l++++W++v++++ + +s +qC++k e+l+kry++++ ++ +r+++ ++p+f l+
GRMZM2G428470_P01 58 CWTHEETLALIEAYRDRWEALQKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKVEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 147
8*************************************998888788899*************************98443..47****9886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MSSSCSDASR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG GGIGLGGVGS GRRLPPPCWT 60 HEETLALIEA YRDRWEALQK GNLRAADWDD VANAVTARCG RFPTATPKSG VQCRHKVEKL 120 RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APPASSPSPV 180 SSPSSEVEAV RSRSLHGLIS NGGAGSGLRF TIPKASRTKP VAAAAVKSER SGSEDDAESE 240 AMAEVAAALR AVGEGFLRME ERRLELSLQM EKERMESEMK RTQTMLDAQQ LFLEAFLGKQ 300 LQHKKAHVSP SSAAMEED
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU965848 | 0.0 | EU965848.1 Zea mays clone 289347 hypothetical protein mRNA, complete cds. |