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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G423393_P01 | ||||||||
Common Name | ABI26, ZEAMMB73_040575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 296aa MW: 33068.1 Da PI: 8.9124 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.3e-23 | 79 | 172 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f kvltpsdv+k++rl +p+++ae + gg ++ l +ed ++g +W+++++ +++s++yvltkGW+ F k+++Lk gD++ F GRMZM2G423393_P01 79 FSKVLTPSDVGKLNRLLIPRQCAEGFfpmisevksGG---DDIFLNFEDtSTGLVWRFRFCLWNNSKTYVLTKGWSVFIKEKNLKKGDILSF 167 88*********************999**996544322...3566788887778*************************************** PP EE-SS CS B3 83 kldgr 87 ++d + GRMZM2G423393_P01 168 YRDAS 172 *7754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-32 | 68 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-26 | 77 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.10E-22 | 78 | 184 | No hit | No description |
PROSITE profile | PS50863 | 12.576 | 79 | 188 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-18 | 79 | 188 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-20 | 79 | 173 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MAFSARTISR EMEVQMGKAP PCLNPFLMVN PLLPPQHVSP WSSKSVPVFQ FGMTNGHGAL 60 DLCEESKRAR KVVHLEYLFS KVLTPSDVGK LNRLLIPRQC AEGFFPMISE VKSGGDDIFL 120 NFEDTSTGLV WRFRFCLWNN SKTYVLTKGW SVFIKEKNLK KGDILSFYRD ASKSIRTNHL 180 FIHIKPHTGT MPLPHHVPSP VFSPSGMVID DQVHDSLNIG KSHGIAPSWK PLSFGSGELM 240 PSTNPTPQQT TFPESTSLAN SIVMAEKHLR LFGVDIDIPT HRYGDESSDG FIKNIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-33 | 76 | 189 | 5 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-33 | 76 | 189 | 5 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G423393 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G423393_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726964 | 0.0 | KJ726964.1 Zea mays clone pUT3664 ABI3VP1 transcription factor (ABI26) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K7UER2 | 0.0 | K7UER2_MAIZE; ABI3VP1 transcription factor (Fragment) | ||||
STRING | GRMZM2G423393_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16167 | 8 | 13 | Representative plant | OGRP19886 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 8e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G423393_P01 |