PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G422644_P01 | ||||||||
Common Name | Orphan308, umc2762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 205aa MW: 22545.2 Da PI: 5.7835 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.6 | 1.1e-07 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++ lfC ++ lC+ C ++ H GRMZM2G422644_P01 3 TICDVCESAPAVLFCAADEAALCRPCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 26.9 | 9.6e-09 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + +C+ +e+ ++ ++Ce +++ lC +C ++ H g H GRMZM2G422644_P01 52 KLARCDICENSPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91 6789*****************************6655556 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.9E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.24E-8 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 5.2E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.3E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.599 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.2E-7 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.52E-7 | 55 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MRTICDVCES APAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLARCDICE 60 NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVPMEIKD 120 PENQREQNTP KEQMANHHNV NDPVSDGNCD GQGNIDSKMI DLNMRPARTH GQGSNSQTQG 180 VDLSVNNHDS PGVVPTSNSE RDAIK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.119235 | 0.0 | endosperm| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G422644 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G422644_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT053771 | 0.0 | BT053771.1 Zea mays full-length cDNA clone ZM_BFb0152K17 mRNA, complete cds. | |||
GenBank | BT083956 | 0.0 | BT083956.1 Zea mays full-length cDNA clone ZM_BFb0058J10 mRNA, complete cds. | |||
GenBank | BT088077 | 0.0 | BT088077.1 Zea mays full-length cDNA clone ZM_BFc0006E22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345639.1 | 1e-152 | uncharacterized protein LOC100193329 | ||||
Swissprot | C0SVM5 | 7e-76 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | B7ZWS9 | 1e-151 | B7ZWS9_MAIZE; B-box zinc finger protein 19 | ||||
STRING | GRMZM2G422644_P01 | 1e-152 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10334 | 22 | 25 |
Representative plant | OGRP3352 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 3e-78 | DBB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G422644_P01 |
Entrez Gene | 100193329 |