 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GRMZM2G418899_P01 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
GRAS |
| Protein Properties |
Length: 431aa MW: 47773.6 Da PI: 5.7168 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G418899_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 125.9 | 4.8e-39 | 2 | 185 | 9 | 194 |
GRAS 9 AeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
A+a + g+ +++Larl+++ p g+p+ R a+y++eAL l++ +++ ++ +s+ +++ +l a+k fs++s +l+f+++ta q
GRMZM2G418899_P01 2 AKAAEVGNSIGRREILARLNQQLPPIGKPFLRSASYLKEALLLALTD-----SHQGSTHLSSPLDVTLKLGAYKSFSDLSHVLQFANFTATQ 88
7778888888899**********************************.....555566666666799************************* PP
GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
a+l+++++ +++HiiDf+++ G+QW+++lq+La R+ ++ p+l++T+++s++s++ el+ t+e+L++fA lg+pfef+ + +l
GRMZM2G418899_P01 89 ALLDEIASTtsSCIHIIDFNLGVGGQWASFLQELAHRRgtgnAPLPMLKLTAFVSSASHHPLELHLTRENLTQFAVDLGIPFEFTDI---NL 177
****998877799************************988666688***************************************98...67 PP
GRAS 187 edleleeL 194
+ +++ eL
GRMZM2G418899_P01 178 DVFDPAEL 185
77776666 PP
|
| 2 | GRAS | 66 | 7.4e-21 | 192 | 295 | 255 | 364 |
GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
e+f+++++ ++ l+dsl+a +++ + ++k+Er+l++++++++v ++++ e+++ Wr+ +++aGF pvpls+ a++qa++ll++v++
GRMZM2G418899_P01 192 EHFMNCFQPCMFLLDSLDAA-GTNVDVASKIERFLIQPRVEDAVLGRQKA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADYLLKRVQV 277
68***************998.7888*******************999887.....99*********************************** PP
GRAS 347 dgyrveeesgslvlgWkd 364
+g++ve+ l l+W++
GRMZM2G418899_P01 278 RGFHVEKCGMGLALYWQS 295
****************96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MAKAAEVGNS IGRREILARL NQQLPPIGKP FLRSASYLKE ALLLALTDSH QGSTHLSSPL 60
DVTLKLGAYK SFSDLSHVLQ FANFTATQAL LDEIASTTSS CIHIIDFNLG VGGQWASFLQ 120
ELAHRRGTGN APLPMLKLTA FVSSASHHPL ELHLTRENLT QFAVDLGIPF EFTDINLDVF 180
DPAELIAPSP NEHFMNCFQP CMFLLDSLDA AGTNVDVASK IERFLIQPRV EDAVLGRQKA 240
EKAMAWRAVF TSAGFAPVPL SNLAEAQADY LLKRVQVRGF HVEKCGMGLA LYWQSALPPH 300
QEIGMLSLSP TMTEVYLLLG ARAYWLLHRG HAMALLGARR DGRHTHLQRG ARVCRACLRA 360
VEKRGQSGTE PSARILQLLL ENGIRVNELT RTKAALILPS VFDDPDEVDK EKEVEYEEIE 420
EEVEYEEIEE D
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Zm.79493 | 0.0 | aerial organ| ear| embryo| endosperm| meristem| shoot |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT062028 | 0.0 | BT062028.1 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds. |
| GenBank | KJ726956 | 0.0 | KJ726956.1 Zea mays clone pUT3653 GRAS transcription factor (GRAS79) mRNA, partial cds. |
