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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GRMZM2G417574_P01 |
| Common Name | Zm.145235 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
C2H2 |
| Protein Properties |
Length: 147aa MW: 15372.4 Da PI: 8.2471 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G417574_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.6 | 9.2e-05 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C++C + F ++ L H++ H
GRMZM2G417574_P01 39 YACHYCRRQFYSSQALGGHQNAH 61
89******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 147 aa
Download sequence Send
to blast |
MVGMGGARPN AAQLPVVVVP DVARRPPSAA AESEPPQLYA CHYCRRQFYS SQALGGHQNA 60
HKRERTLARH RGGGGGAPFA VVHGAFVQAA PAPVTEWDDD ARSGQAPPVV VVVAAGQRLF 120
TGGYVDDSPG VGVGQDELPK LDLTLKL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004087 | 3e-41 | AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09. |
| GenBank | AP014958 | 3e-41 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 3e-41 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
| GenBank | CT835407 | 3e-41 | CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence. |
