PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G409974_P01 | ||||||||
Common Name | LOC100191412, ZEAMMB73_309593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARR-B | ||||||||
Protein Properties | Length: 669aa MW: 72502 Da PI: 6.3137 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.7 | 2.5e-28 | 223 | 276 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl GRMZM2G409974_P01 223 KPRVVWSIELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 276 79*******************.********************************8 PP | |||||||
2 | Response_reg | 73.7 | 7.2e-25 | 30 | 138 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl vdD+p+ +++l+++l++ +y +v ++ ++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +ge + + + + GRMZM2G409974_P01 30 VLAVDDDPVCLKVLETLLRRCQY-HVITTNQAITALKLLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVMKGI 119 799********************.999************99999********************87754.558******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel++ GRMZM2G409974_P01 120 THGACDYLLKPVRIEELRN 138 *****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.6E-191 | 7 | 669 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-40 | 27 | 157 | No hit | No description |
SuperFamily | SSF52172 | 6.55E-35 | 27 | 154 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.1E-29 | 28 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.911 | 29 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-22 | 30 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.03E-25 | 31 | 143 | No hit | No description |
PROSITE profile | PS51294 | 11.078 | 220 | 279 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-19 | 221 | 280 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-30 | 221 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-25 | 223 | 276 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-6 | 225 | 275 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MLLGAAAARM EEKRVITGRE RDQFPVGMRV LAVDDDPVCL KVLETLLRRC QYHVITTNQA 60 ITALKLLREN RDMFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSVNG ETKSVMKGIT 120 HGACDYLLKP VRIEELRNIW QHVVRRKFSK RERSNLDVYK DFNRLPGADP CHSHGHGHGQ 180 TTAGASDQSG RIGRKRKEMH SDEEDDGEEN DFQEGDEPSA AKKPRVVWSI ELHRKFVAAV 240 NQLGIDKAVP KRILELMNVE KLTRENVASH LQKYRLYLKR LSAVASQQAS IVAAFGGRDP 300 FLHMGAFEGL QSYQPFAPCA ALSSFIPHHG SLGRTTAAAF GVPELAPAIT VQAAASNGMI 360 SHCAGDASKF QLSGIQENQQ PNLGQGSATS LGLPQLQQKW IQQETGDLSA VFSGSALANT 420 LSGALQRVAS SPLPPQELLE GVQTKVSAQP PITMASVSSE LVERTVGVSA NLQDSGISPQ 480 GTLPINDGFT ADKLQLQDPF DSNGGTNFSV NMPVCPSGSL TASSNAKGGA SSCSPVLLAP 540 DTGRHSNYLQ FGVAGNSGHD MNDIKQDHLH QGLSTGGFNH DFGTCMTEQT DPNVPYLMPQ 600 MKPNTLSSED KLKQRNIYDL GIPKLHGGFS SSSCNFDGLL NSMIKAEKDD LSFTDSDLGC 660 DFFPLGACI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-25 | 219 | 282 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.28823 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G409974 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G409974_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033495 | 0.0 | BT033495.1 Zea mays full-length cDNA clone ZM_BFb0295K12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657992.1 | 0.0 | uncharacterized protein LOC100191412 isoform X1 | ||||
Swissprot | Q5SML5 | 0.0 | ORR22_ORYSJ; Two-component response regulator ORR22 | ||||
TrEMBL | A0A3L6D9J2 | 0.0 | A0A3L6D9J2_MAIZE; Two-component response regulator | ||||
TrEMBL | K7VE33 | 0.0 | K7VE33_MAIZE; Two-component response regulator | ||||
STRING | GRMZM2G409974_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1856 | 38 | 94 |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-105 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G409974_P01 |
Entrez Gene | 100191412 |
Publications ? help Back to Top | |||
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