PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G408436_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 302aa    MW: 31423.5 Da    PI: 7.2765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G408436_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081200222123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cg +F + + L  H+r+H
  GRMZM2G408436_P01 200 HRCGTCGAVFLTGYKLGGHMRKH 222
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-5158181IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-6158222No hitNo description
PROSITE profilePS501578.663158185IPR007087Zinc finger, C2H2
SMARTSM003550.091158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
PfamPF139127.3E-6200223IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12200228IPR007087Zinc finger, C2H2
SMARTSM003550.67200222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAGSSEDGRR RSVADLRDAA IARRWGGCKQ AASSSSSAQS VQSMAIVVAN PEIVLQPTPL  60
PTIVTPNPSS PVHMEPATPS PSSVPIASTM TNVSNESSSG FAKPMHNDAT ETDNPPTEAV  120
THLDAVPALP SPPPAEVHAA TSSVPPPPLP GPQNPNGYTC KLCSACFPTH QGLGGHMAAH  180
KTRELAAVPC LRDAKPVKEH RCGTCGAVFL TGYKLGGHMR KHYTGPKIVP KKKPRLDDVV  240
TLQLLSPRTV EPASRSPVPG RVLLFGVDIG AEAWMPAAVQ GEEEGSSTTA GQAPSEPTDG  300
EQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G408436
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G408436_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6NGZ60.0A0A1D6NGZ6_MAIZE; Uncharacterized protein
STRINGGRMZM2G408436_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Representative plantOGRP1012237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-13C2H2 family protein