PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G404769_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 562aa    MW: 63360.9 Da    PI: 9.5876
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G404769_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP49.29e-162813114171
            E2F_TDP  41 nkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++RRiYDi+NVLe+++liekk kn+irwkg
  GRMZM2G404769_P01 281 VQKRRIYDITNVLEGIGLIEKKLKNNIRWKG 311
                        59***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.8E-9236311IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.5E-15277313IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-10278312IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.6E-13281311IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF563001.12E-41321549IPR029052Metallo-dependent phosphatase-like
Gene3DG3DSA:3.60.21.101.5E-11326380IPR029052Metallo-dependent phosphatase-like
PfamPF001498.2E-8375480IPR004843Calcineurin-like phosphoesterase domain, apaH type
Gene3DG3DSA:3.60.21.107.2E-37382554IPR029052Metallo-dependent phosphatase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016787Molecular Functionhydrolase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007022developmental stageseed imbibition stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MNRKCLYSRL GTTTLSLRTM KAQISNGRGG CLALKLAEHE GRGGNLSKLL PLFLTEQSLH  60
EAKADPAKAT ANGVPNGTGH SYSGTVPSQQ NSALTPDGNY RAPLLGGVPS AGYLDTTYGY  120
DSTGAQFAWY DGSAYANGQQ RTTTTNRFPS SSFSGNGSSA RYQNKSSTTQ QMGMQNRRPT  180
TTSAAPTYPN RMYPSPRPYT QYGNSVKTGL PYGSNGYDSR INGRCGLGMD NRYRPRACSG  240
YYGYGNESQD GTIELNRGPR SGRFKNQKLY GHTVTIDPVM VQKRRIYDIT NVLEGIGLIE  300
KKLKNNIRWK GVDDSRPGEF SDDMSILQMG RVREKLDIDF VISTGDNFYK NGLKGVRDQA  360
FKESFMDIYI AQSLQKPWYS ELVDFFFVDT TPFQLEYWTH PGKHRYDWRG VAPRGKYIAN  420
LLKDMDVAMK RSTARWKIVV GHHTMRSVSE HGDTEELLEL LLPVLKDNGV DFYINGHDHC  480
LEHISSRDSP LQYLTSRGGS KAWRGVFHPN KDKLRFFYDG QGFMSLQLNQ DQTHFIFYDV  540
FGNILYRWSS RHPQSSTYLD EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qfc_A7e-1630954915299PROTEIN (PURPLE ACID PHOSPHATASE)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.834060.0ear| embryo| endosperm| glume| leaf| meristem| ovary| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G404769
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G404769_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663900.0BT066390.1 Zea mays full-length cDNA clone ZM_BFc0033N20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6F0X50.0A0A3L6F0X5_MAIZE; Purple acid phosphatase 17 (Fragment)
STRINGGRMZM2G404769_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.34e-16E2F transcription factor 1