PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G404769_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | E2F/DP | ||||||||
Protein Properties | Length: 562aa MW: 63360.9 Da PI: 9.5876 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 49.2 | 9e-16 | 281 | 311 | 41 | 71 |
E2F_TDP 41 nkrRRiYDilNVLealnliekkekneirwkg 71 ++RRiYDi+NVLe+++liekk kn+irwkg GRMZM2G404769_P01 281 VQKRRIYDITNVLEGIGLIEKKLKNNIRWKG 311 59***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 8.8E-9 | 236 | 311 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.5E-15 | 277 | 313 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-10 | 278 | 312 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 3.6E-13 | 281 | 311 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF56300 | 1.12E-41 | 321 | 549 | IPR029052 | Metallo-dependent phosphatase-like |
Gene3D | G3DSA:3.60.21.10 | 1.5E-11 | 326 | 380 | IPR029052 | Metallo-dependent phosphatase-like |
Pfam | PF00149 | 8.2E-8 | 375 | 480 | IPR004843 | Calcineurin-like phosphoesterase domain, apaH type |
Gene3D | G3DSA:3.60.21.10 | 7.2E-37 | 382 | 554 | IPR029052 | Metallo-dependent phosphatase-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016787 | Molecular Function | hydrolase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MNRKCLYSRL GTTTLSLRTM KAQISNGRGG CLALKLAEHE GRGGNLSKLL PLFLTEQSLH 60 EAKADPAKAT ANGVPNGTGH SYSGTVPSQQ NSALTPDGNY RAPLLGGVPS AGYLDTTYGY 120 DSTGAQFAWY DGSAYANGQQ RTTTTNRFPS SSFSGNGSSA RYQNKSSTTQ QMGMQNRRPT 180 TTSAAPTYPN RMYPSPRPYT QYGNSVKTGL PYGSNGYDSR INGRCGLGMD NRYRPRACSG 240 YYGYGNESQD GTIELNRGPR SGRFKNQKLY GHTVTIDPVM VQKRRIYDIT NVLEGIGLIE 300 KKLKNNIRWK GVDDSRPGEF SDDMSILQMG RVREKLDIDF VISTGDNFYK NGLKGVRDQA 360 FKESFMDIYI AQSLQKPWYS ELVDFFFVDT TPFQLEYWTH PGKHRYDWRG VAPRGKYIAN 420 LLKDMDVAMK RSTARWKIVV GHHTMRSVSE HGDTEELLEL LLPVLKDNGV DFYINGHDHC 480 LEHISSRDSP LQYLTSRGGS KAWRGVFHPN KDKLRFFYDG QGFMSLQLNQ DQTHFIFYDV 540 FGNILYRWSS RHPQSSTYLD EE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1qfc_A | 7e-16 | 309 | 549 | 15 | 299 | PROTEIN (PURPLE ACID PHOSPHATASE) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.83406 | 0.0 | ear| embryo| endosperm| glume| leaf| meristem| ovary| pericarp| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G404769 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G404769_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066390 | 0.0 | BT066390.1 Zea mays full-length cDNA clone ZM_BFc0033N20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6F0X5 | 0.0 | A0A3L6F0X5_MAIZE; Purple acid phosphatase 17 (Fragment) | ||||
STRING | GRMZM2G404769_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 4e-16 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G404769_P01 |