PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G401521_P01
Common NameZm.9836
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 298aa    MW: 31842.2 Da    PI: 9.3084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G401521_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.7e-33211269159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  GRMZM2G401521_P01 211 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCEVKKQVQRLAKDTSIVVTTYEGVHNHP 269
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-33197269IPR003657WRKY domain
SuperFamilySSF1182901.96E-28203270IPR003657WRKY domain
PROSITE profilePS5081128.506206271IPR003657WRKY domain
SMARTSM007741.1E-38211270IPR003657WRKY domain
PfamPF031063.2E-26212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MPVVELWLLL PSAAPPVDLV ASNVCAPNAS HLPSPSLSHA PTRRQSQLPR SCTVHPPVTY  60
ISRGAGSLDL SPPARALFLS MENLPLLGGI RQQPNTQLAT ATCLAAPQPE QHACRDATTT  120
TSLVVPAMSF PPAAVDWASL LLPRSTSGGA NELESGGGIA ETVAGSSASA TTAGEGDNNK  180
TGKAGRGGGR GKKKASRPRF AFQTRSEDDV LDDGYRWRKY GQKAVKNSAF PRSYYRCTHH  240
TCEVKKQVQR LAKDTSIVVT TYEGVHNHPC EKLMEALSPI LKQLQLLSQL QSCTNQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24201268774Probable WRKY transcription factor 4
2lex_A2e-24201268774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G401521
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G401521_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560660.0EU956066.1 Zea mays clone 1556750 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649897.11e-161probable WRKY transcription factor 24
TrEMBLA0A1D6MAC91e-160A0A1D6MAC9_MAIZE; Putative WRKY DNA-binding domain superfamily protein
TrEMBLA0A3L6E5B31e-160A0A3L6E5B3_MAIZE; Putative WRKY transcription factor 56
STRINGGRMZM2G401521_P021e-166(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-46WRKY DNA-binding protein 56