PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G399098_P01
Common NameLOC103639531, ZEAMMB73_408262
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 322aa    MW: 34300.6 Da    PI: 7.3715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G399098_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-202776255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  GRMZM2G399098_P01 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76
                       69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-282686No hitNo description
PfamPF008477.1E-142776IPR001471AP2/ERF domain
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
SMARTSM003804.9E-362790IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-302785IPR001471AP2/ERF domain
PRINTSPR003673.2E-102839IPR001471AP2/ERF domain
PRINTSPR003673.2E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MQSYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRASA VSSAAAHQRL RWLSASARGA AAVPAYGLLN  120
LNAQHNVRVI HQRLQELKNN GSPAKPPPSP SLRVSPSAPH KQLAPADHLP AVATTSPCSI  180
VVVTHVHAAP AMSCFHALEQ TVATVAMRTV DDAEPCEGGA CPPAADKPQI DLREFLQQIG  240
VLNTDDDGIT ATAKAAFHAA GDAAVSCFVS GNGDFDWDVL AADLNDIAGA HGGANGGVQM  300
DDLHEHAVDQ FGTCLPIPVW DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162884663ATERF1
3gcc_A1e-162884663ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO169162981e-118
Expression AtlasGRMZM2G399098-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G399098_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284070.0KJ728407.1 Zea mays clone pUT6712 AP2-EREBP transcription factor (EREB124) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660493.10.0dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-113DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLK7W2R50.0K7W2R5_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G399098_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.17e-46ERF family protein