PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G398506_P01
Common Namepco084191
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 557aa    MW: 59936.6 Da    PI: 6.7887
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G398506_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32174231260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  GRMZM2G398506_P01 174 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGHHNHPK 231
                        8****************************************.***************85 PP
2WRKY107.66.1e-34347405159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  GRMZM2G398506_P01 347 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 405
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-28164232IPR003657WRKY domain
PROSITE profilePS5081123.525168232IPR003657WRKY domain
SuperFamilySSF1182907.59E-25172232IPR003657WRKY domain
SMARTSM007744.6E-35173231IPR003657WRKY domain
PfamPF031062.3E-24174230IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-38332407IPR003657WRKY domain
SuperFamilySSF1182905.1E-30339407IPR003657WRKY domain
PROSITE profilePS5081138.297342407IPR003657WRKY domain
SMARTSM007746.5E-40347406IPR003657WRKY domain
PfamPF031061.2E-26348405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGAGCSP EKPVLADRRV SALAGAGARY KAMSPARLPI SREPCLTIPT  60
GFSPGALLES PVLLNNFKAT AVNNQNHHDI PMQNHGSNHA SPSSNLMTEN KPLCSRESSH  120
TANVSSAPNQ PVSIVCPSDN MPAEVGTSEM HLINSSENAA QETQTENVAE KSAEDGYNWR  180
KYGQKHVKGS ENPRSYYKCT HPNCEVKKLL ERSLDGQITE VVYKGHHNHP KPQPNRRLAA  240
GAVPSSQAEE RYDGVAPIED KPSNIYSNLC NQAHSAGMVD NVPGPASDDD VDAGGGRPYP  300
GDDSNDDDDL DSKRRKMESA GIDAALMGKP NREPRVVVQT VSEVDILDDG YRWRKYGQKV  360
VKGNPNPRSY YKCTHTGCPV RKHVERASHD PKSVITTYEG KHNHEVPASR NASHEMSAAP  420
MKPVVHPINS SMPGFGGMMR ACDARAFNNQ YSQAAESDTI SLDLGVGISP NHSDATNQMQ  480
PSVPEPMQYQ MRHMAPVYGS MGLPGMPVPA IPGNVVASSI YGSREEKGNE GFTFKAAPLD  540
RSANLCYSSA GNLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36174408878Probable WRKY transcription factor 4
2lex_A3e-36174408878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.671180.0ear| endosperm| meristem| pericarp| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G398506
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G398506_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0617140.0BT061714.1 Zea mays full-length cDNA clone ZM_BFb0176N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146223.10.0uncharacterized LOC100279793
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLC0HHA80.0C0HHA8_MAIZE; Uncharacterized protein
STRINGGRMZM2G398506_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-108WRKY family protein