PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G395842_P02
Common Namegpm902, ZEAMMB73_730346
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 369aa    MW: 41765.3 Da    PI: 7.8724
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G395842_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.4e-06427226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k +lC+ff+  G C  G+ C F+H+
  GRMZM2G395842_P02  4 KKVLCKFFMH-GACLKGEYCEFSHD 27
                       789***8888.*************5 PP
2zf-CCCH28.42.8e-093555526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        C f+++ G C+yG+rC++ H+
  GRMZM2G395842_P02 35 VCTFYQK-GACSYGSRCRYDHV 55
                       5******.*************7 PP
3zf-CCCH19.32e-06152173426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C+ fa+ G C+yG+ C+ +Hg
  GRMZM2G395842_P02 152 PICS-FAAAGNCPYGEGCPQMHG 173
                        6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156639.7E-8160No hitNo description
SMARTSM003561.1E-5228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2773057IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-43256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-53254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.286148175IPR000571Zinc finger, CCCH-type
SMARTSM003560.31149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.29E-13208281No hitNo description
Gene3DG3DSA:3.30.40.104.1E-10211276IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.23E-4216276No hitNo description
PROSITE profilePS5008912.312217275IPR001841Zinc finger, RING-type
PfamPF000973.0E-7217274IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.0E-7217274IPR001841Zinc finger, RING-type
PROSITE patternPS005180241250IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.019304332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526304333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSTKKVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ KGACSYGSRC RYDHVKVSRN  60
PTVPPPRPTS STSRRASTSL QLSSYNHPPH MVHQTDSSNQ RHQISVDVLA HSASKPAWRN  120
DFQHDIVSDD GIDWSSNQNL INQTSLKPVD LPICSFAAAG NCPYGEGCPQ MHGDLCATCG  180
KLCLHPYRPD EREEHIKLCE KNHKRLVALK RSQEIECSVC LDRVLSKPTA AERKFGLLSE  240
CDHPFCIECI RNWRSNSPAS GMDVNSALRA CPICRKLSYY VIPSVLWYFS KEEKEEITES  300
YKSKLKSIDC KYFDFGTGSC PFGTSCFYKH AYRDGRLEEV ILRHLDADDG STVIAKSIRL  360
SDFLGRMDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.272570.0aerial organ| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G395842
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}.
UniprotTISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}.
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G395842_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656290.0BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169041.10.0uncharacterized protein LOC100382879
RefseqXP_008658836.10.0uncharacterized protein LOC100382879 isoform X1
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A3L6DEX40.0A0A3L6DEX4_MAIZE; E3 ubiquitin-protein ligase makorin
TrEMBLC0PBG00.0C0PBG0_MAIZE; Uncharacterized protein
TrEMBLK0DG290.0K0DG29_MAIZE; C3H5 C3H type transcription factor (Fragment)
STRINGGRMZM2G395842_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-149C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]