PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G389379_P01
Common NameLOC103647503
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 286aa    MW: 29912.6 Da    PI: 7.4271
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G389379_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.17.9e-3265117558
        ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                        rY+eClkNhA+ +GghavDGCgEfmp+ geegt  al+CaACgCHRnFHR+e++
  GRMZM2G389379_P01  65 RYRECLKNHAVGIGGHAVDGCGEFMPA-GEEGTLGALRCAACGCHRNFHRKEPA 117
                        8*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015664.5E-3065115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2265116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2965116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.9166115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.12E-19210284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-31213285IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-24223279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDFDDHDDSD EEMAPMPMPM PMPVSSSYDA PPLAAGFGGG GVEPLSVRAK APAGGLGGGG  60
GGGGRYRECL KNHAVGIGGH AVDGCGEFMP AGEEGTLGAL RCAACGCHRN FHRKEPAAGS  120
LVSPAALAAY GSAAPHHHHF SPYCRTPAGY FHQQPLQMAP PVPVGHTPRP LALPSTSHGW  180
RDDGDGDDDF SGMAGPLSSA VGPLGGMSLG GTTGPSGSGG SGKKRFRTKF SQEQKDRMLA  240
FAERVGWRVQ KHDEAAVQQF CDEVCVKRHV LKVWMHNNKH TLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-272242811875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.517500.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G389379
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G389379_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726551e-180EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023157446.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2591e-108ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A1D6ERL70.0A0A1D6ERL7_MAIZE; Zinc-finger homeodomain protein 2
STRINGGRMZM2G389379_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-58homeobox protein 22