PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G388148_P01
Common NameCPP9, LOC100304343
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 530aa    MW: 57878.3 Da    PI: 6.4933
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G388148_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.7e-1367104139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        k+kk+CnC++skClk+YCeCf++ ++C+  C+C++C N 
  GRMZM2G388148_P01  67 KKKKHCNCRNSKCLKMYCECFQELQYCDG-CNCSNCGNI 104
                        589**************************.******996 PP
2TCR49.21e-15152192141
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        k++kgC+Ckks ClkkYCeC++a+++Cs++C+C +CkN+e 
  GRMZM2G388148_P01 152 KHHKGCHCKKSGCLKKYCECYQANVFCSKNCRCMHCKNSEG 192
                        589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.2E-1167107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.32468192IPR005172CRC domain
PfamPF036381.4E-969103IPR005172CRC domain
SMARTSM011143.8E-17152193IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.8E-12155190IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEQGRNQQHP QQLSSPPVLA AASEIKAPAV PSQQPKPAAP VMSVPRQWPI AFNPLKSSTE  60
EKSVTPKKKK HCNCRNSKCL KMYCECFQEL QYCDGCNCSN CGNIVGNENA RNEAIEAIRQ  120
RNPSAFQPKI GNDSNTLNVR KDNSGAVPLV AKHHKGCHCK KSGCLKKYCE CYQANVFCSK  180
NCRCMHCKNS EGNKDTETSI QRDHASDRNH IEQAANIAFN GSVGSSGYIC SLSRKRSHED  240
TQCVRINSEG SMPETQYQQG NHADVSMLPP CSTGFDGHNA ANTKPYNPNY RSPLANTIHL  300
SEVNDLVKQL VMVCRMAAAT IADDETDLIA EEKGSQSNNG LSNGNCKQQD FKEASSMVIL  360
SEGCSDQPNI DETGSHRSKT LDFSRPASPT TQALMCDEQD ATFGNEPASP TTQALMCEEQ  420
NTTFGNDYRS SFPLVSCDQD ISEINAAQEN LVLTGLREYL RVIITRGKIN EHKSSLEAAM  480
ELDAQQHHGA PPALSATEDE EKSPPSSTIE TPRTNQQPTP NGGSKDSIGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-236920111132Protein lin-54 homolog
5fd3_B6e-236920111132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.255110.0ovary| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G388148
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G388148_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609020.0BT060902.1 Zea mays full-length cDNA clone ZM_BFb0068M03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159253.10.0uncharacterized protein LOC100304343
TrEMBLA0A3L6EG540.0A0A3L6EG54_MAIZE; Protein tesmin/TSO1-like CXC 5
TrEMBLC0HEZ60.0C0HEZ6_MAIZE; CPP transcription factor
STRINGGRMZM2G388148_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-66Tesmin/TSO1-like CXC domain-containing protein