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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G386674_P01 | ||||||||
Common Name | LOC100283251, Zm.3904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 320aa MW: 34029.2 Da PI: 6.0473 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.8 | 3.3e-28 | 4 | 106 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a+p++ r+++++sl+yeA+ r+ +PvyG+vg++++ ++q GRMZM2G386674_P01 4 SCNGCRVLRKGCSDACTIRPCLqwidsPEAQANATVFLAKFYGRAGLLNLLAAAPDDAaRPAVFRSLLYEACGRIVNPVYGSVGLLWSRRWQ 95 6*****************************************************88887********************************* PP DUF260 87 leqlkaelall 97 + ++e++l GRMZM2G386674_P01 96 SCVDAVEAVLK 106 **999988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.916 | 3 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDACT IRPCLQWIDS PEAQANATVF LAKFYGRAGL LNLLAAAPDD 60 AARPAVFRSL LYEACGRIVN PVYGSVGLLW SRRWQSCVDA VEAVLKGDPV VQVDAGSEAA 120 AAPAPLLGAS RPAAPPAAYD IRHVARDPDA VAAADLLRVA RGGGRRRFKR AGSSSNACKA 180 KPLKGKASSN ERASPSPTQR QHQQETEELE LEPVPMVVEL EHGEESAGSH DHHHHLQPQG 240 SEEDTDVEAA SHVSQAEAEP PVSSQSQALV ADQEGEEVRL ELTLGFEPVV RQQPRLSCCD 300 SSGLSAASSL IGLRLQLPAA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.3904 | 0.0 | ear| endosperm| pollen| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G386674 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G386674_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963596 | 0.0 | EU963596.1 Zea mays clone 264458 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149625.2 | 0.0 | seed specific protein Bn15D17A | ||||
TrEMBL | A0A1D6M9Z4 | 0.0 | A0A1D6M9Z4_MAIZE; Seed specific protein Bn15D17A | ||||
STRING | GRMZM2G386674_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 9e-50 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G386674_P01 |
Entrez Gene | 100283251 |
Publications ? help Back to Top | |||
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