PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G380094_P01
Common NameLOC100384564
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 402aa    MW: 42967.3 Da    PI: 7.8524
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G380094_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.39.6e-1464145286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++    +  +  +s +qCk++++ l+k+yk +k+   +        ++yfd+l+
  GRMZM2G380094_P01  64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVssrdSYSKAPKSDVQCKNRIDTLKKKYKVEKAKHDS-------DWRYFDRLD 145
                        *************************************85444455567889***************9998886.......59****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2262147No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDDDGGASRS PSPSPSRSPS PSPLPVADPV TVAAAPPGHV AVAIPLRKHS PSSGGGGGGR  60
EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDSYSKAP KSDVQCKNRI  120
DTLKKKYKVE KAKHDSDWRY FDRLDDLLAP VLLKPNSSSS SAAAAAAAAA AARSAGPMVP  180
PRINFPQRTR TPLHSSAGAK WRMPSPLLQP SASSDSSDGF PPSAVANGKR QRVEEPAAAA  240
ADNGAESSVS RAQGLRELAQ AIRRLGEVYE RVESAKRDQE LRMERERLDS ARQLEEQRVQ  300
FFLKMQMELS KATGGAATAT PTPMAVPIPT DGNGTRRAGV TAEVATSSNH RVRYRIKGSR  360
HQHAPQQAHY QNSTSPTGGD DNGSDSDKEA QEDAEDEDEE SQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.405710.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G380094
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G380094_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0836570.0BT083657.1 Zea mays full-length cDNA clone ZM_BFb0025O10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170546.10.0uncharacterized protein LOC100384564
TrEMBLC4IYL00.0C4IYL0_MAIZE; Trihelix transcription factor ASIL2
STRINGGRMZM2G380094_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-40sequence-specific DNA binding transcription factors