PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G378653_P02
Common NameLOC100273300, ZEAMMB73_992623
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 372aa    MW: 39181.3 Da    PI: 10.0786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G378653_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-09203250455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  GRMZM2G378653_P02 203 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 250
                        8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-10197254No hitNo description
Gene3DG3DSA:4.10.280.102.0E-14199267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAPLSPTPAS ASAPVSSSPR SLVPDASAAP MRPASPPQEL PAAGGEIQAA LAPANASTAG  60
ARGGGGSFTA LLGLPTSQAM ELLLPRTTPP ALATAPAPTF PSDPHLVDRA ARLSTFAPPS  120
PSPSSTSPAR PLPAAANAGK RKADPVDRAS KRRRTLALIA PWPQGKAAKK GKTAEEKLAG  180
GDGDDEKPAY VHVRARRGQA TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD  240
EIINHVQSLQ RQVEYLSMRL AAVNPRVDFG GLDSFLTTEC GRIAGFNCKN GIDLEQVTWP  300
EMGVHGARQL MQLQQQFWHG DLTHPHQVAS QWEKRGDGHP PVFSNSSPSL FGYDLTSSGA  360
QQTPASKLKT EL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139153KRKADPVDRASKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.188640.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G378653
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G378653_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0627470.0BT062747.1 Zea mays full-length cDNA clone ZM_BFb0340N22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347160.10.0uncharacterized protein LOC100273300
SwissprotQ8VZ023e-64BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A1D6P4V30.0A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G378653_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]