PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G377217_P02
Common NameZEAMMB73_889400, Zm.83538
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 185aa    MW: 19873.6 Da    PI: 8.0512
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G377217_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.34.8e-11159180122
                        ---SS-EEEEEEE--TT-SS-E CS
               WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                        ldDgy+WrKYGqK+vk+s +pr
  GRMZM2G377217_P02 159 LDDGYKWRKYGQKVVKNSLHPR 180
                        59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-12144180IPR003657WRKY domain
SuperFamilySSF1182907.98E-10151180IPR003657WRKY domain
PROSITE profilePS5081112.771154180IPR003657WRKY domain
SMARTSM007740.0086159185IPR003657WRKY domain
PfamPF031061.9E-7160181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEGGQLGTCL PSFLVPDHYA FPLPLPPLQL PSSQPNNKPF QMPFDDVQEE AGNHAGMLSS  60
SDHCGLYPLQ SLPFGSSASG GAGAAACGGK PTAVGFMPSC SAVGAEEVCT SVAPTTNGCN  120
ESNSAWWKAS AAERGKMKVR RKMREPRFCF QTRSDVDVLD DGYKWRKYGQ KVVKNSLHPR  180
IILLP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.835380.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G377217
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G377217_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7712191e-108AY771219.1 Zea mays RFLP probe umc156 (CBM 4.06) genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335044.11e-133probable WRKY transcription factor 12
TrEMBLA0A3L6F4E11e-131A0A3L6F4E1_MAIZE; Putative WRKY transcription factor 12
TrEMBLK7UHL41e-131K7UHL4_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G377217_P011e-132(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.15e-29WRKY family protein