PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G375707_P01 | ||||||||
Common Name | MADS42, ZEAMMB73_558575, Zm.17006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 468aa MW: 50374 Da PI: 8.2796 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48 | 1.6e-15 | 13 | 60 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie+ + r+ tf kRr g++K A+ LS+L++a+vav++ s++g++ + GRMZM2G375707_P01 13 FIEDGRDRSLTFFKRRSGLFKAASDLSTLTGARVAVVLESESGRFSSF 60 79******************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-12 | 2 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.801 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-8 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 3.96E-16 | 7 | 63 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-15 | 8 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-17 | 13 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-8 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-8 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MMARRDRRSG VRFIEDGRDR SLTFFKRRSG LFKAASDLST LTGARVAVVL ESESGRFSSF 60 GTPEASPIVD AFLLGSAPTD LDTSEADKAS ITNLQNEVFQ LEKDKAMEDK RRKESLARSS 120 RKVQQASKVA RYVYGSVDDL DATELFEMYR ELSRVQQEIS DRLPTTLLHD ASKADAGGGR 180 GRLRDPSLLR PTWWRASAMP LPPLQQAATP PTKCPPWAPS QARFQFQQHP WAASSTSPPA 240 VLPRSSGSPL PSSAILPSPL APQNPSFLRH HHPLAPHTTP PTSAGVQFQA PRTPAPTEAQ 300 NPYTYYIRGI DIISGNSSHP SSLSPVMPSS SPTPHQQPSS LRAPPSDDSS PLSLSPRVSY 360 PLHVGSPYHQ QLPLSAQNHN SVQQPPPPPE SCAHVVGSPL IVHSHQVFYS NLSPDLNAEL 420 GSVDDGGAGA THADGGLGLS SPQQSDGFDG VTPNKSFSAG QSSGSGWW |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G375707 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G375707_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061291 | 0.0 | BT061291.1 Zea mays full-length cDNA clone ZM_BFb0131L22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001167759.1 | 0.0 | uncharacterized protein LOC100381450 | ||||
TrEMBL | A0A3L6DKB5 | 0.0 | A0A3L6DKB5_MAIZE; Serum response factor B | ||||
TrEMBL | C0HG35 | 0.0 | C0HG35_MAIZE; Agamous-like MADS-box protein AGL62 | ||||
STRING | GRMZM2G375707_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3089 | 22 | 76 |
Representative plant | OGRP9531 | 4 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 2e-11 | AGAMOUS-like 28 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G375707_P01 |
Entrez Gene | 100381450 |