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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G375675_P01 | ||||||||
Common Name | LOC103635017, ZEAMMB73_053248, Zm.2848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Nin-like | ||||||||
Protein Properties | Length: 927aa MW: 102076 Da PI: 5.8709 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.8 | 5.1e-29 | 581 | 632 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ GRMZM2G375675_P01 581 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 632 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.655 | 571 | 652 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.3E-26 | 584 | 632 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.37E-20 | 823 | 918 | No hit | No description |
SMART | SM00666 | 1.9E-24 | 833 | 915 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 17.825 | 833 | 915 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.6E-24 | 833 | 914 | No hit | No description |
Pfam | PF00564 | 1.2E-14 | 833 | 914 | IPR000270 | PB1 domain |
CDD | cd06407 | 3.84E-33 | 834 | 914 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 927 aa Download sequence Send to blast |
MDFDPSPASA HGDGSGGAWP FDSLTTSMLF SSVSASPQLP ASSSSWLTPP SPLWLFEDRH 60 LLPLDAPSAA PEAAVAAAVV EEVQRARSGN SHTTGKRVDQ INHKWQFHLS LDEDGTDNSS 120 FFKEKLTQAL RYFKESTDQH LLVQVWAPVK NGDRYVLTTS GQPFVLDHQS IGLLQYRAVS 180 MMYMFSVDGE NAGDLGLPGR VYKQKVPEWT PNVQYYSSGE YQRLNHAISY NVHGTVALPV 240 FDPSAQSCIA VVELIMTSKK INYACEVDKV CKALEAVNLK STEILDHPNV QICNEGRQAA 300 LVEILEILTV VCEEHKLPLA QTWVPCKYRS VLAHGGGLKK SCLSFDGSCM GEVCMSTSDV 360 AFHVIDAHMW GFRDACVEHH LQRGQGVSGK AFISHKPCFS KDIRKFCKLA YPLVHYARMF 420 GLSGCFAICL QSSYTGNDDY ILEFFLPLDC IDEDDQNALL ESILTLMKRC LRSLKLVDDN 480 DLSGVSLHLS NVLKLENEES KTDAQFDGSL RESPEDDRHG GSHKFDNENQ KVLDITEGQL 540 LTDDYSQDNG TSVGRPNGSG ASDSSLLHKT NKPPERRRGK AEKTISLEVL QQYFSGSLKN 600 AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK QVIESVQGSD AAFNLTSITG 660 PLPIPVGPSP ESLNVEKLTQ SKVAELSNLA VGVDRDSLQK SLENDDHFDI VMAQQGFIDN 720 NNDVQLEADK ASHSRSSSGE GSINSRTSEG SCQGSPANQT FVCKPIASMF AEPQLNQEEF 780 NKEPFQEPQL PLSRMLIEDS GSSKDLKNLF TSTSDQPFLA PPNNLVSMKH SGTVTIKASF 840 KEDIVRFRFP CSGGVIVLKE EVAKRLRMDV GTFDIKYLDD DHEWVKLACN ADLEECMEIS 900 RLSGSHVIRL LVSDIAAHFG SSCGSSG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G375675 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G375675_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085359 | 0.0 | BT085359.2 Zea mays full-length cDNA clone ZM_BFc0002J20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008655807.1 | 0.0 | protein NLP3 | ||||
Swissprot | Q5NB82 | 0.0 | NLP3_ORYSJ; Protein NLP3 | ||||
TrEMBL | K7VRG4 | 0.0 | K7VRG4_MAIZE; Protein NLP6 | ||||
STRING | GRMZM2G375675_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4778 | 36 | 60 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G375675_P01 |
Entrez Gene | 103635017 |