PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G370896_P01 | ||||||||
Common Name | ZEAMMB73_759935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 286aa MW: 31770.3 Da PI: 6.0007 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 149 | 193 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k +G g+W+ I+r + Rt+ q+ s+ qky GRMZM2G370896_P01 149 PWTEEEHKLFLMGLKNYGRGDWRNISRNFVRSRTPTQVASHAQKY 193 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.435 | 24 | 78 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.0E-4 | 28 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-9 | 30 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-5 | 31 | 74 | No hit | No description |
PROSITE profile | PS51294 | 17.503 | 142 | 198 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.16E-17 | 144 | 198 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-16 | 145 | 196 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.4E-11 | 146 | 196 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 147 | 192 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.81E-10 | 149 | 194 | No hit | No description |
Pfam | PF00249 | 5.2E-11 | 149 | 193 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MTELWMEVLP PYFAGQAGGW FLLDRRAGPG AWTLEENKMF ERALARVDWD APDRWERVAA 60 VLPRRTVADV AAHYDDLEVD VGSIEAGFVP FPRYGGCGGG TSQSAAGFTF EWDGDAGGTG 120 FNKRSCYVVG GGGKRDERGP DHERKKGIPW TEEEHKLFLM GLKNYGRGDW RNISRNFVRS 180 RTPTQVASHA QKYFIRLSSG GKDKRRSSIH DITTVNLPDD DDDGDDDDTG GGNPPVISEQ 240 LGVLVDSRPP PPHPYRHLLL PHPYGNVKLE PRHGGFLDDS VLMQSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-15 | 32 | 108 | 11 | 87 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.98980 | 0.0 | meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G370896 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G370896_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054281 | 0.0 | BT054281.1 Zea mays full-length cDNA clone ZM_BFb0211P03 mRNA, complete cds. | |||
GenBank | BT055802 | 0.0 | BT055802.1 Zea mays full-length cDNA clone ZM_BFb0203M07 mRNA, complete cds. | |||
GenBank | BT066672 | 0.0 | BT066672.1 Zea mays full-length cDNA clone ZM_BFb0049J12 mRNA, complete cds. | |||
GenBank | HQ858785 | 0.0 | HQ858785.1 Zea mays clone UT1771 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657607.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-76 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3L6DPP8 | 1e-172 | A0A3L6DPP8_MAIZE; Transcription factor DIVARICATA | ||||
STRING | GRMZM2G370896_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-80 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G370896_P01 |
Publications ? help Back to Top | |||
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