PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G360523_P01 | ||||||||
Common Name | ZEAMMB73_040041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARR-B | ||||||||
Protein Properties | Length: 671aa MW: 73467.8 Da PI: 7.5655 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.6 | 2.5e-27 | 192 | 245 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W eLH++Fv+av+q+ G+++A+Pk+ile+m+v+gLt+e+v+SHLQkYR+ GRMZM2G360523_P01 192 KQRVQWCGELHQKFVQAVRQI-GIDRAVPKKILEIMDVEGLTRENVASHLQKYRI 245 79*******************.********************************7 PP | |||||||
2 | Response_reg | 70.8 | 5.6e-24 | 12 | 121 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+++ +++l++ l+ +y ++++++d++ al++l+e++ +Dl++ D+ m +mdG++ll+ i e +lp+i+++a++e +++ + GRMZM2G360523_P01 12 VLAVDDDRVCLKILERQLKCCNY-NTTVVTDAQTALDMLRERKdgnqFDLVISDVVMTKMDGFKLLELIGLEM-DLPVIMLSANSETQTIMK 101 799********************.***************99888999**********************6644.8***************** PP HHHTTESEEEESS--HHHHH CS Response_reg 89 alkaGakdflsKpfdpeelv 108 +k Ga d+ +Kp+ e+l+ GRMZM2G360523_P01 102 GIKHGACDYMVKPVRLEQLR 121 *****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 6.4E-32 | 9 | 131 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.8E-37 | 9 | 135 | No hit | No description |
SMART | SM00448 | 4.3E-27 | 10 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.846 | 11 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.4E-21 | 12 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.01E-25 | 13 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 189 | 250 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.931 | 189 | 248 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-18 | 190 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 192 | 245 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MDADTFPVGL RVLAVDDDRV CLKILERQLK CCNYNTTVVT DAQTALDMLR ERKDGNQFDL 60 VISDVVMTKM DGFKLLELIG LEMDLPVIML SANSETQTIM KGIKHGACDY MVKPVRLEQL 120 RGIWTHVVKN SKIDPRNNIG SDSDDVVQKL PSGDGDKGEK VGETRQKKYP KKNKKTVDVA 180 DEDNEKTSAQ KKQRVQWCGE LHQKFVQAVR QIGIDRAVPK KILEIMDVEG LTRENVASHL 240 QKYRIYLRKL GDGTLRSSSP FADETEAFRR NMNVPSFISS SSSSNHFAKM NSSSLIGTET 300 LLPTESVYIM SPQKNLGISR SNMEPVSHGV NLPKDVIPMP VQDISRFISS GKSYAPVWSD 360 GLLGRSQCFP SGPSGSSFAN ISNSVVLNAS KPFSVDISGR SLANGSNDRP PLTSNMCFSS 420 SHSCSSYASI LGGKILGSSR RIPFEDIADG EMLAPGNLPL QSPQLVKQPS SAGLFNEVAR 480 DVHQFAGLSN SWKVAVPPRF SDLGHNVGTS EGHSQGNIFK INRLSRLARS SAQIPTFRNE 540 YQKKTTGIMG KAVPVVGFRE QVAPFSFENN TRSTVTLIGN SALSSSSSTR PGLNINNSAM 600 LTQVLNGGGA NDNLHGVSTV NQQAVNDQVN NEFFMGTNEA HNAESDDLDD FLAYLVNQDF 660 INNGDSFIDR D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-21 | 188 | 250 | 1 | 63 | ARR10-B |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G360523 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G360523_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659835.1 | 0.0 | two-component response regulator ORR25 isoform X2 | ||||
TrEMBL | A0A3L6DGH1 | 0.0 | A0A3L6DGH1_MAIZE; Two-component response regulator ORR25 | ||||
TrEMBL | K7VFP6 | 0.0 | K7VFP6_MAIZE; Putative two-component response regulator family protein | ||||
STRING | GRMZM2G360523_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13504 | 21 | 32 |
Representative plant | OGRP12395 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 3e-83 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G360523_P01 |
Entrez Gene | 103638799 |