PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G359599_P02 | ||||||||
Common Name | ZEAMMB73_426908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 131aa MW: 14444.7 Da PI: 9.1141 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 58.5 | 2.7e-18 | 1 | 65 | 22 | 66 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................s 66 +Rls+ +a++f +Lqd+LGfdk+skt++WLl q+kp i+ l++ + GRMZM2G359599_P02 1 MRLSVGVAREFLALQDRLGFDKASKTLNWLLAQSKPPIDCLVDAadqvavvtggrptlvkgreqG 65 8****************************************999555555555554444444321 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.403 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.6E-16 | 1 | 93 | IPR005333 | Transcription factor, TCP |
SMART | SM00271 | 2.8E-5 | 89 | 128 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 10.955 | 90 | 131 | IPR001623 | DnaJ domain |
CDD | cd06257 | 4.33E-15 | 91 | 126 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 3.01E-14 | 91 | 127 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 1.4E-14 | 91 | 126 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.2E-12 | 91 | 126 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.3E-10 | 92 | 110 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.3E-10 | 110 | 125 | IPR001623 | DnaJ domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 131 aa Download sequence Send to blast |
MRLSVGVARE FLALQDRLGF DKASKTLNWL LAQSKPPIDC LVDAADQVAV VTGGRPTLVK 60 GREQGSNSST CCLTDLRWDK RLNCSKCVTY CFQILGVGKT TSQQEIKKAY HKLALRLHPD 120 KNPGDEVVSQ P |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.39804 | 1e-101 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G359599 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G359599_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 4e-99 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ727762 | 4e-99 | KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148951.2 | 5e-39 | teosinte branched1 protein | ||||
TrEMBL | A0A1D6PMZ1 | 5e-48 | A0A1D6PMZ1_MAIZE; Chaperone protein dnaJ 6 | ||||
STRING | GRMZM2G359599_P01 | 2e-90 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67260.2 | 6e-13 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G359599_P02 |