PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G358701_P01 | ||||||||
Common Name | ZEAMMB73_744970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 273aa MW: 30150.1 Da PI: 8.6201 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 69.5 | 5.2e-22 | 96 | 158 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L aeN++L++e+ +l++ ++kl+ e+ GRMZM2G358701_P01 96 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLAAENTSLRSEIGRLTESSEKLRREN 158 89*********************************************************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.5E-18 | 91 | 156 | No hit | No description |
SMART | SM00338 | 9.5E-22 | 96 | 160 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-20 | 96 | 158 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.346 | 98 | 161 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.38E-11 | 99 | 155 | No hit | No description |
CDD | cd14702 | 1.44E-19 | 101 | 149 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 103 | 118 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MGSFGLVATL HVATAMLWLD VEVGLLHSPM TLERAPNHTL GNATILPQHC FSAPVIKPSA 60 TNVANSRAIG TTLSPPPGVM VPVHNAVPSD LSVKDERELK REKRKQSNRE SARRSRLRKQ 120 AETEELATQV ESLAAENTSL RSEIGRLTES SEKLRRENSA LMAISCQSAF PLTRGALSLI 180 RSQPKSKLMH YQRNCLRFQV SQVSAKGQVD ALSKELFALS TVTDNRCTSY DTVYHESNGS 240 SGVYNLFIRA LSSYPTDVSE SWTENADYIM AEW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 118 | RRSRLRK |
2 | 112 | 119 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.263 | 0.0 | endosperm| meristem| ovary| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G358701 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G358701_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT033625 | 0.0 | BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds. | |||
GenBank | BT062412 | 0.0 | BT062412.1 Zea mays full-length cDNA clone ZM_BFb0293N02 mRNA, complete cds. | |||
GenBank | BT062784 | 0.0 | BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds. | |||
GenBank | JX469957 | 0.0 | JX469957.1 Zea mays subsp. mays clone UT3219 bZIP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | GRMZM2G358701_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2776 | 38 | 88 | Representative plant | OGRP700 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01120.1 | 1e-18 | G-box binding factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G358701_P01 |