PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G352159_P07
Common NameLOC100273544
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 661aa    MW: 73003.9 Da    PI: 7.4619
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G352159_P07genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.54.5e-22137233194
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F +  +
  GRMZM2G352159_P07 137 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQHPPNQELVAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLR--T 226
                        99*****************************555555669***********************************************94..3 PP

                        SEE..EE CS
                 B3  88 sefelvv 94 
                        s +e+vv
  GRMZM2G352159_P07 227 SPAEFVV 233
                        5555555 PP
2Auxin_resp81.61.8e-272252901883
         Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        r+s++eFvv+++++ ++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ ++dp+ W +SkWrsLk
  GRMZM2G352159_P07 225 RTSPAEFVVSRDRYYESLKRNYSIGMRFKMRFEGEEAAEQRFTGTIVGIGASDPSGWADSKWRSLK 290
                        799*************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-35131238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-35133235IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-19135234No hitNo description
SMARTSM010192.3E-19137236IPR003340B3 DNA binding domain
PROSITE profilePS5086310.842137239IPR003340B3 DNA binding domain
PfamPF023623.6E-20137233IPR003340B3 DNA binding domain
PfamPF065073.8E-24225290IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAAAACAGAE AGRGCGGKDA LFVELWKACA GPLSCVPPLG EKVYYLPQGH IEQVEASTNQ  60
LAEQQGTPLY NLPWKIPCKL MNIELKVEPD TDEVYAQLTL LPDKKQDENT STTVEEEEVV  120
VPPALPATNE GPHIHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ HPPNQELVAK  180
DLHGAEWRFR HIFRGQPRRH LLQSGWSVFV SAKRLVAGDA FIFLRTSPAE FVVSRDRYYE  240
SLKRNYSIGM RFKMRFEGEE AAEQRFTGTI VGIGASDPSG WADSKWRSLK VRWDEPSSIS  300
RPERVSPWQI EPSVSPCHVN PLPVRFKRSR SSVNALPSDV STVTREVTSK VMADSQQNSL  360
TRALHNQGRT QLTVRYHDNS DVKTTQDLTV WSSGTEQQRN NIAAQTKLCL EGWTPTRSPE  420
GYNQIFSAFK PLKDIHNPLG PFPSQISGTH SNSWDTADAR YPVQQANYSM LPGTWSLRPH  480
NSGFRMNQQN YLVMPEGANF TGKSAFTSLQ DHGTDKCSTG CFGHIESSSH TDHASSSLIR  540
PQPLVLGNGV QKSKGTSFKL FGIPLGSPEK SEPLVSPPSV AYDGKLQTSP SEKGNQLDVV  600
EVDNCSHPSK TVKPLDGPQS DSITENNQPS PEATLNIQNK VQSSSTRSCK KVHHMLHLFP  660
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1211931217354Auxin response factor 1
4ldw_A1e-1211931217354Auxin response factor 1
4ldw_B1e-1211931217354Auxin response factor 1
4ldx_A1e-1211931217354Auxin response factor 1
4ldx_B1e-1211931217354Auxin response factor 1
4ldy_A1e-1211931217354Auxin response factor 1
4ldy_B1e-1211931217354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.947400.0ear| embryo| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G352159
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G352159_P07
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663280.0BT066328.1 Zea mays full-length cDNA clone ZM_BFb0177O05 mRNA, complete cds.
GenBankBT0670080.0BT067008.1 Zea mays full-length cDNA clone ZM_BFb0145N21 mRNA, complete cds.
GenBankKJ7280200.0KJ728020.1 Zea mays clone pUT6156 ARF transcription factor (ARF8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405166.10.0uncharacterized protein LOC100273544 isoform X3
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A1D6MTW00.0A0A1D6MTW0_MAIZE; Auxin response factor
STRINGGRMZM2G352159_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-146auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]