PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G351018_P01
Common NameZEAMMB73_869537
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 1513aa    MW: 165545 Da    PI: 8.0146
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G351018_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.71.2e-10769814752
                        --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
           Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                        f +  ++ L+ +Fek++yps+e++e ++++lgLt +qV+ WF   R
  GRMZM2G351018_P01 769 FGPVATQKLKVHFEKDPYPSRETKENISEELGLTFNQVSRWFSSTR 814
                        6677899***********************************8776 PP
2Homeobox30.46.6e-1010221062949
                         HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS
           Homeobox    9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49  
                         +  ++ L+e+Fek++yp ++++e LA++lgLt +q++ WF 
  GRMZM2G351018_P01 1022 PIVTQKLKEHFEKDPYPCRATKEGLAQELGLTFNQISKWFS 1062
                         556899**********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.649760820IPR001356Homeobox domain
SMARTSM003893.3E-11763824IPR001356Homeobox domain
SuperFamilySSF466891.58E-10766825IPR009057Homeodomain-like
CDDcd000869.85E-11767818No hitNo description
Gene3DG3DSA:1.10.10.606.6E-11768823IPR009057Homeodomain-like
PfamPF000464.8E-8769814IPR001356Homeobox domain
PROSITE profilePS5007111.33710111071IPR001356Homeobox domain
SMARTSM003899.8E-710131075IPR001356Homeobox domain
SuperFamilySSF466891.58E-910161062IPR009057Homeodomain-like
CDDcd000869.00E-1010171062No hitNo description
PfamPF000461.8E-710221062IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-1010251064IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1513 aa     Download sequence    Send to blast
MGRKGSEMSP SKRYPLRSPH SSGRVLRSAL ANDNKDSEPL NAAAATQAAV KKRSGSQLDS  60
PNSSVRLFHS TSKNKNEACS GPLNDRIPDK PAANKRKRAS PSQVGSSSNS VRVLRSAIKN  120
KDEACSKSLS DRTAGEPAAN KRKNVNRSKT GSLSCGVRVL LSASKAKDET STKPLNDSAA  180
VEPASGKRKG TSPSKVGSAS NSVRVLRSTS KYKNETCTEP LNDSGAVEPA ANKRKGVSRS  240
KKRSLNSSVR VLRSASNNKI EVSIKPLGNS TAGQPAAKRR KSGSSFEAGS PVSSARVLRS  300
TSERKNEASK PLNESTAAQP AARKKKAGVI SKTDNPKIGL RVLRSASGKK NEACIGHVND  360
STSAEPTVTK RNRKPSMDRS PKKDYLKICQ RVRYILNRMN YQQTFIQAYA SEGWKGQSLE  420
KIRPEKELER AKAEILQCKL RIREAFRNMD SLLSKGKLEE SLFDSAGEIS SEDVGVPPGD  480
QRWLCPACVC KADSIDALNE LQGSKLSIHD SWEKVFPEAA SIANGSKQVD TSDLLPDHIK  540
HSDNPALVEG LMVNEVRLSA EDDSKADDLG LPSEDSGDGD FDPSGPDSSE DQKDGLNSEE  600
SDFTSDSDDF CAEIAKSCGQ DEVSASPLSN VINHTYRMKL RASNNRSNEE NHDHVFMDME  660
LGQDMVLPVS SRRQVERLDY KKLYDEAYGK ESSNSSDDKE WSGKELLEGS ETDSLSERPH  720
PVKRCSRRAQ AEQQNNEHTP QRERLHGSES EQKTGILRSN GSSSTGRKFG PVATQKLKVH  780
FEKDPYPSRE TKENISEELG LTFNQVSRWF SSTRHYSRVA SARKEMHPDG HTSENNDTTT  840
VDSMQARQPN TVVMEKLTGN RNDIVSEKPM VQNNLNQGVA EKLTRDRNDI VPEKQVVQSN  900
LNQCNNEDIP LSGTEIEMES YEQESSESSD EEWSTLSTPR KTKLQGNEKV SLTESLRSAK  960
RCSRRAPARE QNNEHTQSEQ LHGSASEQQA REQLHGSVSK QQTEVLRSNV SSGDASKCHF  1020
GPIVTQKLKE HFEKDPYPCR ATKEGLAQEL GLTFNQISKW FSATHHYSRD AVAKNQKYPG  1080
ENTTENNSST IFDGIQVIEP NFGLIDKPDA DTNDMISEKL MVQINLNEGI EEDIPPSQYT  1140
TRCEEKLTMT QAAISREAGP PGYGPGENFL QVSSRITSCE QSVIMAPSAI ARGVGPPGYT  1200
PGEHQGNGAP WNTSYERRPF TSPTTSSREV GPPGYGPEEN QGSGISCNTS REQILFMSPT  1260
TISRELGPPG YLPRENQRSD TSWNTSCESG LFMSPATTSI EHGPPGYGPG ENQENDSTSC  1320
ELRMFTSPTI VSREVGPPGY QQGVFMSPKT ISREVCPPGF GSGENQGNDT TWYKQSAFTS  1380
PTTISREVGP PGYGQEDQGN GGSWNTSCEQ GVFTSPTRGI SREVGPPGYG PGESQGNTTS  1440
WISTCQQRML AGIQRTGGSR SMDLEAFPPG YGPGGASGSV ISPQARSAEN VEFSDEARKK  1500
AIQRELRRRQ KFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1140.0cell culture| embryo| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G351018
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the outer layers of globular embryos. {ECO:0000269|PubMed:15094187}.
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, panicle and seeds. {ECO:0000269|PubMed:21951842}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G351018_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX897610.0X89761.1 Z.mays mRNA for homeobox 2b protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338675.10.0uncharacterized protein LOC542536
SwissprotQ8H9910.0HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A1D6GBR70.0A0A1D6GBR7_MAIZE; Putative homeodomain-like transcription factor superfamily protein
STRINGGRMZM2G351018_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.19e-43Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]