PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G345155_P01 | ||||||||
Common Name | LOC100276106, ZEAMMB73_603163, Zm.124778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 141aa MW: 15272.2 Da PI: 7.0435 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 30 | 50 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ L H++ H GRMZM2G345155_P01 30 CTYCGRKFCTSQALGGHQNAH 50 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.87E-6 | 21 | 67 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEREQELDLE LTLLPSAWAT QEEAPGFFLC TYCGRKFCTS QALGGHQNAH KYERALAKRR 60 RDIAAALRKH GVPVTRAGQF HAGASPSARA TAGVAGSERP DAGRERPVAV DELQGAPAPW 120 QSGGLLHQVE RTEELDLSLG L |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.124778 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G345155 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G345155_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960065 | 0.0 | EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465203.1 | 8e-48 | zinc finger protein 2 | ||||
TrEMBL | A0A3L6DHB9 | 1e-97 | A0A3L6DHB9_MAIZE; Zinc finger protein 2 | ||||
TrEMBL | B6T500 | 1e-97 | B6T500_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G345155_P01 | 2e-98 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 6e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G345155_P01 |
Entrez Gene | 100276106 |
Publications ? help Back to Top | |||
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