PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G339957_P01
Common NameLOC100273362, THX6, ZEAMMB73_480449
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 350aa    MW: 38799.8 Da    PI: 10.2953
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G339957_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.11.5e-1075165285
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdql 85 
                        Wt++ +laL++a  +   r +r+  ++  W ev++ +     r  g+  s  qC+++ + l+k++kk++e++++    + +s s+++y+d++
  GRMZM2G339957_P01  75 WTERSTLALLDAWGDSFVRAGRSIIRADEWLEVARLVcaavgRPAGY-FSDAQCRNRVDTLRKKFKKERERARRAarrSGPSPSKWVYYDKM 165
                        ***********************************998887555555.5889******************99876322567889******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1474167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSDDATAAAP SSPSTSPSPS SASSSGASPS PSSPRTKRRR TDRYALGFEF APRLAPYELP  60
EEPLPDKHKR SWPNWTERST LALLDAWGDS FVRAGRSIIR ADEWLEVARL VCAAVGRPAG  120
YFSDAQCRNR VDTLRKKFKK ERERARRAAR RSGPSPSKWV YYDKMVAILC PTPPPLPTLP  180
PPARPPPLPL QLLPLVAKRR RDRQPARRFQ WGMKAPERLL GGAGDVVGPR VSGSGAKLGE  240
LGPQKNSAVQ GKRNGFMALT ESIQKFEEAF ARMESSKRQH MVKVEQMRRD LQRDLDAKWR  300
EILEKAQAEI GRLSNEDGDE HDVDEDGDVG DGKRLEGGDE QNNGAMDASP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.846130.0meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G339957
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G339957_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409250.0BT040925.1 Zea mays full-length cDNA clone ZM_BFc0153A15 mRNA, complete cds.
GenBankBT0608890.0BT060889.1 Zea mays full-length cDNA clone ZM_BFb0066D07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141273.10.0uncharacterized LOC100273362
TrEMBLA0A3L6D9210.0A0A3L6D921_MAIZE; Trihelix transcription factor ASIL1
TrEMBLB4FUY70.0B4FUY7_MAIZE; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
STRINGGRMZM2G339957_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.15e-126B-interacting protein 1-like 1