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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G339848_P01 | ||||||||
Common Name | LOC100501975, ZEAMMB73_085913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HB-other | ||||||||
Protein Properties | Length: 881aa MW: 96882.1 Da PI: 5.2719 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.7 | 5.4e-05 | 653 | 713 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS--HH..HHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsae..ereeLAkkl.....gLterqVkvWFqNrRak 54 rrkR +++eq++eLe++ ++ + ++ + ++kl ++t +q k+W Nr+ak GRMZM2G339848_P01 653 RRKRNIMNSEQIDELEKALVDEPEMHRNpvLLQGWSEKLslqgpEITSSQLKNWLNNRKAK 713 89***************99965555544114566777777777*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-6 | 634 | 714 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.009 | 650 | 717 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-4 | 652 | 721 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-4 | 653 | 716 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MGPPLVIFFG LMIDMVSAVE ELSGLSSKEL NEMLKESDNF VLQSKAEGGG PKQTLVDMEK 60 LVSSLPLHLI AVCLELRQGP DLTYVLRGMR FLHSLSDLAS RHTRLEQVLL DDVKLSEQVM 120 DLIFFLLSIL AEQKKENNVG ASPLVHASLV AASLHLLTSY FSSQWHELVH ILLAHPKVDI 180 FVDVAFDSLH EDELSRNGGI LSLSHTILKL AVPECLKQST DLVASISRLK AKILSILLQL 240 CEAESVSYLD EVATNSNSMR LGQTLALEVL NLLKIAFGKK KYITSDSHDK VKIYPMGSML 300 ISALRLVDVF SDDSNFRSSF LTNTVPFLTQ ILATPHGEFV SSWCSVNLPA IEEDASLDYD 360 PFVASEVALL ASNNVLTEAK ADYSCPFRPS LPSVAYAQTR TSCVVKIIAN LHVFIPNICE 420 EQERDLFLQN FQKYLVSGSS KLSADQPASS DFDATKVCRN LGSLSDYAKT LVPNLLNGED 480 LLLLSDFSDK LQSWCKSQVA VKVVQNDIPP ESMEDMHPMQ QPLPTRASTP DSKMNNFPKD 540 VQNMEVSAPI PPINREGNDK DETPKNTVSR NGGFLQNAVG QDLVHLGVAR TASGGSSAVT 600 SVVSTGHQRS KMDLDPASGS VDNFKTPELT KENGLQGDDK GESSVYDERQ PKRRKRNIMN 660 SEQIDELEKA LVDEPEMHRN PVLLQGWSEK LSLQGPEITS SQLKNWLNNR KAKLARIAKE 720 RGTFEGDNAD KPSTPHPGES SESAGEDNYI PPARVMTAPS KGRLVSPDGN EKTSQAELSP 780 NTMLIRPFTR SFSLEPGRLV SLVDSDGKEV GRGKIFQAPG KSPAPVESRI CTVDVTELRT 840 EKWRELPHPS EASGRTFQEA EARNGGIMRV SWDSGRLLPV V |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85866 | 0.0 | endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G339848 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G339848_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU946678 | 0.0 | EU946678.1 Zea mays clone 322151 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001350130.1 | 0.0 | uncharacterized protein LOC100501975 | ||||
TrEMBL | A0A1D6PPE7 | 0.0 | A0A1D6PPE7_MAIZE; Putative homeodomain-like transcription factor superfamily protein | ||||
STRING | GRMZM2G339848_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5126 | 14 | 18 |
Representative plant | OGRP3853 | 5 | 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G339848_P01 |