PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G337892_P01
Common NameMADS17
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 460aa    MW: 48707.4 Da    PI: 5.8476
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G337892_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.12e-122869344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i + + r  tf +R++++  KA+ELSvLC+++va+++++ +g
  GRMZM2G337892_P01 28 IRDRRARVDTFGRRKETLKAKAFELSVLCGVDVALVVAAADG 69
                       566777888*****************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-131894IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-71880IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.1661869IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-52040IPR002100Transcription factor, MADS-box
PfamPF003191.0E-112869IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-54055IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-55576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0001007developmental stagepollen development stage
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MTGKRRSAER AQEGAAGRGR GRRALGLIRD RRARVDTFGR RKETLKAKAF ELSVLCGVDV  60
ALVVAAADGD GDAAADVWES TEGAVLARYR ALDPEVRARA RHTHRAYLEG GLGKEEAKLA  120
RVHQAGPTAL DPWPWDKALD GTATAEEAQR LLEAIDAAIR ASEDRMRALG LPVDGEDVVG  180
PGAALEMIAT LDSAGVDGYP LHPPGGGDTY DNQAIWSNEG FNAYNFQQCP AGSSSAGMEG  240
YHLQVAPEMY TGSGHNNGRI ATDAHMYQPP DAGTMQHGYG FHQCAGIDCF GMPAGHQMQE  300
LPGWGTAQAN MAMWRTEEPR HAMVPVHYPS AQTGLSYMET LAALGAQGGG GLSFAMGTSC  360
NFVNAPPVLP LAMGTAGCGG RDFINARPVA FSHAICGTSD NCTDTTPAGP LAMSYGADLT  420
IAGGYATQWQ AGRSGHQSGI ELLRYLGRLE ENTQLHLWGN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G337892
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G337892_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276780.0KJ727678.1 Zea mays clone pUT5605 MADS transcription factor (MADS17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001358002.10.0uncharacterized protein LOC115072892
TrEMBLA0A060D7620.0A0A060D762_MAIZE; MADS transcription factor (Fragment)
STRINGGRMZM2G337892_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Representative plantOGRP1164635