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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G335814_P01 | ||||||||
Common Name | GRAS16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 732aa MW: 82795.3 Da PI: 6.547 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350.1 | 3.5e-107 | 352 | 723 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++ L++cA+avs ++++la+ +L+ +++++s +gd +qRla+++++ L+arla+++s+ly+ l ++ ++ ++ l++++l v P+l+ GRMZM2G335814_P01 352 LRTILIHCAQAVSVNNHTLANDMLNIIRQHSSITGDDTQRLAFCLVNCLEARLAGTGSQLYRNLIATCSD---VAAILKVFQLSLAVIPLLR 440 5789*********************************************************999888887...9****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181 +sh N++Il+ ++g+++vHi+Df+i G+QWp+Ll++La+R++gpp++RiTg++ p++g ++ + ++tg+rLa++A+ ++vpfe+++ GRMZM2G335814_P01 441 VSHYFSNKTILDVLKGKSKVHIVDFGICFGFQWPSLLEQLAKREGGPPKVRITGIDLPKQGfrpDRMNKQNTGQRLADYASMFNVPFEYQA- 531 ***********************************************************99*99999999*********************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +++++e++++e+L+++++++l+Vn++ ++++l de+vs++s+r++vL++++ ++Pkv+v+ + + +++ Fl+rf e +++ysa+fd l++ GRMZM2G335814_P01 532 ISSKWETIRIEDLNIDEDDVLIVNCIDRMKNLGDETVSINSARNRVLNTIRMMKPKVFVHGIVNGSFGTPFFLTRFKEVMYHYSAFFDILDK 623 7******************************************************************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 ++pr++e+r+ +Er ++ ++ nv+aceg+er+er e+++kW++r +aG+++++l+ +++k + ++ k+++d y ++e++++l++gWk+r GRMZM2G335814_P01 624 TVPRDNETRMLIERGIFLCQLLNVIACEGSERIERPENYKKWKSRNLNAGLEQLQLNPDIVKVTRDMMGKYHKD-YVINEDDHWLLMGWKGR 714 ************************************************************************77.***************** PP GRAS 366 pLvsvSaWr 374 L ++S W+ GRMZM2G335814_P01 715 ILNAISTWK 723 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.317 | 326 | 704 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-104 | 352 | 723 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MDFNDKPSSN FDEDFQSNMS ATSGFYSFIH PANESNELEL FLDQPRSAHH YPPVSNASND 60 SGHITSTTSC STEICGPQFC DLSSNATPDW YGTSVTDSSN NSWINSDITI SYLNKLLTDE 120 DSDDKVKPHH GECALRAMEE PFYRILAQNN PAYPESPSLC SRGHLNNLGD NINKSLGQPC 180 SSCSVAIDWS NSHSNHILQA FEAPWSLSDV VKETSRSAEC TRNMELGVRI DGLSIAEKRS 240 RDNQSLQVNV ADASKHTSSE LPSGNYSRQE DSYLIEARSS KQVAFSFNGP IRDEMFDRVL 300 LFSEHKPTYE AIVLQEMMAN KSTGHPQNEQ GRTPARRKMR GKKQQKKEVV DLRTILIHCA 360 QAVSVNNHTL ANDMLNIIRQ HSSITGDDTQ RLAFCLVNCL EARLAGTGSQ LYRNLIATCS 420 DVAAILKVFQ LSLAVIPLLR VSHYFSNKTI LDVLKGKSKV HIVDFGICFG FQWPSLLEQL 480 AKREGGPPKV RITGIDLPKQ GFRPDRMNKQ NTGQRLADYA SMFNVPFEYQ AISSKWETIR 540 IEDLNIDEDD VLIVNCIDRM KNLGDETVSI NSARNRVLNT IRMMKPKVFV HGIVNGSFGT 600 PFFLTRFKEV MYHYSAFFDI LDKTVPRDNE TRMLIERGIF LCQLLNVIAC EGSERIERPE 660 NYKKWKSRNL NAGLEQLQLN PDIVKVTRDM MGKYHKDYVI NEDDHWLLMG WKGRILNAIS 720 TWKPSESYDG DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-44 | 336 | 724 | 3 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G335814 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G335814_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728017 | 0.0 | KJ728017.1 Zea mays clone pUT6153 GRAS transcription factor (GRAS16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023157117.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A060D7B7 | 0.0 | A0A060D7B7_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | GRMZM2G335814_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11788 | 26 | 40 |
Representative plant | OGRP11365 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-143 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G335814_P01 |
Entrez Gene | 103643668 |