|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GRMZM2G334722_P01 |
Common Name | LOC100191872 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
Family |
Trihelix |
Protein Properties |
Length: 387aa MW: 40507.6 Da PI: 4.2745 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G334722_P01 | genome | MaizeSequence | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 34.7 | 4.6e-11 | 87 | 170 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekk 70
+Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r rg +r++ +C+ +we l+ +y +++++e +
GRMZM2G334722_P01 87 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaaseallsgpgsrrRGRGSKRTAGECRRRWEALAAEYGAVRRWEVR 170
5*************************************************99999**************************987 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MDPAAADRPC VIQSLPANCN TLPPPLVQAL PANCNTLPPP LVQALPAKTN PSQPSSPTAK 60 RRHAPPAPGS GPAPPSPRRT RSGGAPEWTP AETLALVAEV AAVDDGWSRS VSAFQKWAMV 120 AENLAASEAL LSGPGSRRRG RGSKRTAGEC RRRWEALAAE YGAVRRWEVR TGATYWEMGA 180 AARRKAGLPA EFDDEVYGAM DALIRVEEAL LADAAGGGAG GEDVEGLVGG GAGCVGVEVG 240 KQDGGDSVEA EVGEEQVQQD ASAGEEEEQD VDEDVEEMQE DGGNAGASND LGHETGTSVE 300 PERSQDIASE LANKLHDNAQ HIHAILKEEA AQDGGQNHDL GSSMLPDAME AARRKADELI 360 QSLGGLVSYL NQFTELVKET GFENIAT
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT034113 | 0.0 | BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds. |
GenBank | BT085710 | 0.0 | BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT4G31270.1 | 2e-12 | sequence-specific DNA binding transcription factors |