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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G334225_P01 |
| Common Name | LOC100282219 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 390aa MW: 43641.6 Da PI: 4.6756 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G334225_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.3 | 8.5e-28 | 33 | 82 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l +s
GRMZM2G334225_P01 33 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFS 82
79********************************************9997 PP
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| 2 | K-box | 21.8 | 7.7e-09 | 135 | 204 | 9 | 78 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78
+++ e+lqqe++ + ++e L++++R + + + +s+++ + e+ L + l+ + ++K+ ll++++
GRMZM2G334225_P01 135 PINSNVEELQQEIKTYQHQMEVLKEQLRMFEPDLTTLMSMNDFETCEKFLMDTLTCVEERKKYLLCNHVA 204
557899*******************9887777777789***************************99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MSICIPGSPL QFACNLGGDR LHSIMGRVKL QIKRIENNTN RQVTFSKRRN GLIKKAYELS 60
VLCDIDIALI MFSPSNRLSH FSGRRRIEDV ITRYINLPEH DRGGVVRNRE YLMKMLAKLK 120
CEGNIAEQLT PNKEPINSNV EELQQEIKTY QHQMEVLKEQ LRMFEPDLTT LMSMNDFETC 180
EKFLMDTLTC VEERKKYLLC NHVAPFDPSA SDMQQHVDMF ALPPAPPHQQ EQQGDDLGGA 240
ASAFGGDVSW FADGMPTSSI FAASDPILYF RDQVMFDSTS TMRRDSMVAG VDPGMTSVCQ 300
MEQQAPSVDW QQAYTSAEFF STLIPSTPYP LDDQMQNDMA QVLTSPMVPP HEHDKVEVPM 360
SSSNVPTDGD CGTTLAAAQE DGLPGVVNIG
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6bz1_A | 3e-18 | 25 | 99 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_B | 3e-18 | 25 | 99 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_C | 3e-18 | 25 | 99 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_D | 3e-18 | 25 | 99 | 1 | 74 | MEF2 CHIMERA |
| 6c9l_A | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 3e-18 | 25 | 99 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU960063 | 0.0 | EU960063.1 Zea mays clone 221530 MADS-box protein AGL66 mRNA, complete cds. |
