PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G327059_P05 | ||||||||
Common Name | LOC100281788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 620aa MW: 66061.1 Da PI: 6.653 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 376 | 413 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + GRMZM2G327059_P05 376 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 413 664459******************************88 PP | |||||||
2 | BELL | 87.3 | 1.7e-28 | 239 | 307 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elq+ k kL +leeVd+rY++y+eq++++++ Feavag +a+ Yt+lA+++iSrhFr+L+d ++ q+ GRMZM2G327059_P05 239 ELQRLKDKLYIMLEEVDRRYRRYCEQMRALAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGVVAQL 307 89999*************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.3E-43 | 158 | 305 | IPR006563 | POX domain |
Pfam | PF07526 | 1.7E-43 | 164 | 303 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 354 | 417 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-9 | 357 | 421 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.97E-12 | 357 | 418 | No hit | No description |
SuperFamily | SSF46689 | 2.31E-17 | 358 | 424 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-28 | 360 | 423 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 374 | 413 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025541 | anatomy | bundle sheath cell | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MAHDPSLGFA DYFSAAAAAG ATAMDDDVGA PELYGLHADD MEFLGMRGLA AMPPAAAHHQ 60 HHHHHGHSKA GALLDDDDAG VGPDVSGSAD DATMRFLSEQ QQQQHQAPLS LSLCRPDVAT 120 TLHEQQHLAG GGSSSRYHQE QQPAAWVQQQ HDYSPSPQQH AWHLRSSRFL VPAQQVLQEF 180 CSLPVDSSSA AASSKRAKAA NKPASQQQQQ QEDGGGAEGS SSSASWAPSP QIQAMDALEL 240 QRLKDKLYIM LEEVDRRYRR YCEQMRALAG GFEAVAGERA AAAYTALASR TISRHFRSLR 300 DGVVAQLQAA RRALGEKDVA VPGMTRGDTP RLRVLDQCIR QHKALTQAAG MMESHPWRPQ 360 RGLPERAVTI LRAWLFEHFL HPYPSDVDKH ILARQTGLSR SQVSNWFINA RVRLWKPMVE 420 EMYVEEMKAE GQDGGGQQQV GVAVANNPNP SSAGHASEAA EDDGRGDSGG GAVVDRKPTR 480 AQLLHDAGSL ASVVNIGGGS RAGFGIMDHL DFDAYGGHHA GAVSLTLGLQ QHDSHADGGA 540 GGVNIAFGAP PPAHHHGYLF APTAAAAGHQ MGGGVHPGLH HHVQFSGAGA GIDGEAAHGQ 600 EHYRGLQGGG GFHLLRDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 7e-17 | 363 | 420 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-17 | 363 | 420 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.43367 | 0.0 | endosperm| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G327059 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G327059_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957980 | 0.0 | EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001355027.1 | 0.0 | uncharacterized protein LOC100281788 | ||||
Refseq | XP_008675423.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675432.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675437.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675441.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675447.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675456.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
Refseq | XP_008675463.1 | 0.0 | BEL1-related homeotic protein 14 isoform X1 | ||||
TrEMBL | B6SZ15 | 0.0 | B6SZ15_MAIZE; BEL1-related homeotic protein 14 | ||||
STRING | GRMZM2G327059_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 7e-82 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G327059_P05 |
Entrez Gene | 100281788 |
Publications ? help Back to Top | |||
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