PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G320287_P01
Common NameLOC103628667
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 508aa    MW: 55138.6 Da    PI: 7.8122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G320287_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-057294123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C+k F r  nL+ H r H
  GRMZM2G320287_P01 72 YICEVCHKGFQRDQNLQLHRRGH 94
                       89*******************88 PP
2zf-C2H210.90.0015148170123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+k +  +s+ k H + +
  GRMZM2G320287_P01 148 WKCDRCSKKYAVQSDWKAHTKIC 170
                        58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-67194No hitNo description
Gene3DG3DSA:3.30.160.602.6E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0387294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7417294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035543113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-6143168No hitNo description
SMARTSM00355230148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSSHTSEEES LSSFQQQQAK LEACHAAGSS KADAAAAAMP VVKKRRGHPG TLDPDVEVVA  60
LSPKTLLATN RYICEVCHKG FQRDQNLQLH RRGHNLPWKL KQRSSTEAKK KVYVCPEATC  120
PHHDASRALG DLTGIKKHYS RKHGEKKWKC DRCSKKYAVQ SDWKAHTKIC GTKEYRCDCG  180
TIFSRKDSFI THRAFCDALA EDTSRVNHSL ATMVGSLHGH QQDIFSHGVP TFPTSPPDVM  240
ANLSSINDHN SDSHLRSLSP YALITRNTAL FSNQISPKDP GGFPLDGSAS SYPYMSMTSP  300
YMSATALLQK AAEMGAKTSQ DPISPLLLKS FPSNVTTPSP RDHHMDISSG SQGDSLGNSA  360
ANSVVVGIKA AEDEGSYLSG RGSILMSSPW VNTYRPATVP LIGLMNHPFG MSRAEKESSA  420
GMFPGGQTQH SRQENISGPV GDAGLTQDFL GLGGSGNLEM GSADTYNADV SVTALSYSDE  480
QQKPQDHIYP YHQSSLDSTA LEKPIWES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33144206365Zinc finger protein JACKDAW
5b3h_F9e-33144206365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G320287
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G320287_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849461e-154KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647054.10.0protein indeterminate-domain 12
TrEMBLA0A1D6H9C80.0A0A1D6H9C8_MAIZE; Protein indeterminate-domain 5 chloroplastic
STRINGGRMZM2G320287_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2