PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G317900_P01 | ||||||||
Common Name | Zm.22832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 975aa MW: 107538 Da PI: 6.6036 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.9e-23 | 100 | 201 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F GRMZM2G317900_P01 100 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVIFV-- 187 99*****************************954.4444.48************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++++l+++ +r+ GRMZM2G317900_P01 188 RDEKQQLLLGTRRA 201 55788889999886 PP | |||||||
2 | Auxin_resp | 116.9 | 1.7e-38 | 226 | 309 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+++ GRMZM2G317900_P01 226 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNIQ 309 79**********************************9********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.76E-43 | 89 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-40 | 92 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.82E-20 | 99 | 191 | No hit | No description |
Pfam | PF02362 | 5.4E-21 | 100 | 201 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.66 | 100 | 202 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-22 | 100 | 202 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-33 | 226 | 309 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-9 | 841 | 927 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.947 | 842 | 926 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.77E-7 | 854 | 921 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 975 aa Download sequence Send to blast |
MIKQQQQQAP PAPAPAAAPP PSACEGEKKA PPINSELWHA CAGPLVSLPP AGSLVVYFPQ 60 GHSEQFLDIK LTVNGDQYGK EALQLSELAL KQPRPQTEFF CKTLTASDTS THGGFSVPRR 120 AAEKIFPPLD FSMQPPAQEI QARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA 180 GDSVIFVRDE KQQLLLGTRR ANRQPTNISS SVLSSDSMHI GILAAAAHAA ANNSPFTIFY 240 NPRASPTEFV VPFAKYQKAL YGNQISLGMR FRMMFETEEL GTRRYMGTIT GISDLDPVRW 300 KNSQWRNIQV GWDESAAGER RNRVSIWEIE PVAAPFFICP PPFFGSKRPR QLDDESSEME 360 NLLKRAMPWL GEEICIKDPQ TQNTIMPGLS LVQWMNMNMQ QNSFANSAMQ SEYLRSLSNP 420 NMQNLGVADL SRQLNLQNQI LQQNSIQFSS PKLPQQMQLA NELSKASLPL NQIGVGTKPQ 480 EQTQDPNNLQ RQQQSMNQLL PLSQSQTNLV QAQQQLSNSQ PLSQQQTMPQ QSIQVPSRAT 540 PPPTTTVQQE SQQKLPQKHV GFTDTSHTTI PPTTSVNTIS VVGSPLMATG ATHSVVTDEI 600 PSCSTSPSTA NGNHIVQPVL GRNQLCSMIN YEKVPQSTPM SIPSSLEAVT ATPRSIKELP 660 KLNSNVKQSV MASKLPNAGH VAQNLTNNAP PTDYPETASS ATSVWLSQAD GLLHHSFPMS 720 NFNQQQQMFK AAAPETDIQG ADPSNNTLFG INGDGQLGFP MGADDFLSNG IDASKYQGHI 780 STDIDGNYRI SKDGQQEISS SMVSQSFGAS DMAFNSIDSG MNDGGFVNRT SWPPAPPLKR 840 MRTFTKVYKR GAVGRSIDIS QFSGYDELKH ALARMFSMEG QLEERQRIGW KLVYKDHEDD 900 ILLLGDDPWE EFVNCVKCIR ILSPQEVQQI SLDGDLGNNI LPNQACSSSD GGNAWRARCD 960 QNSGNPSTGS YDQFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-136 | 29 | 330 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.22832 | 0.0 | embryo| endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G317900 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G317900_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645045.1 | 0.0 | auxin response factor 19 isoform X2 | ||||
Swissprot | Q0D9R7 | 0.0 | ARFS_ORYSJ; Auxin response factor 19 | ||||
TrEMBL | A0A1D6GVF5 | 0.0 | A0A1D6GVF5_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G317900_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Representative plant | OGRP4193 | 11 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 1e-171 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G317900_P01 |
Publications ? help Back to Top | |||
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