PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G317450_P03
Common NameLOC100279738
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 429aa    MW: 46574.2 Da    PI: 8.4694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G317450_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16173222255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  GRMZM2G317450_P03 173 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEVIEYIRFLQ 222
                        889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-18169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-21170234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-14173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-15173226No hitNo description
SMARTSM003533.8E-12177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MQLFQGEKPA HDFLSLHTGG GPSSPVQQQH PAQGYESGAH SSLKPMKLDR RRRGGGGGGA  60
IDMAPSSGLE SDSEEHVLPG GVGTFSIRQV ASATRSRGEA AGHGVVSGAF PPAVHVSRTE  120
EGPPHGAESG ARAHSGPLAM WQDSGVDQRS RGARGGEGRS SGSSADQGPS TPRSKHSATE  180
QRRRTKINDR LEILRELLPH GDQKRDKASF LLEVIEYIRF LQEKVQKYES AQPEKNHEDS  240
SMPWAKVYYR SCWKNTENII QGGGLAPSTK DENKEQYDSK QTTVASSALF DTQSARETSA  300
NDISSQKATS KAKCRADNSV PGKQPPWLSM STSDADNKTL SKNEKQTLQE DTQSLSDAYS  360
QGLLNRLTQA LKRSGVDPSQ ASISVEISMD RRATEPNNIH DNLKDHECED IIHVTKKLRG  420
ERSKISSSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.316160.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G317450
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G317450_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0547900.0BT054790.1 Zea mays full-length cDNA clone ZM_BFb0052O12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146169.20.0uncharacterized protein LOC100279738
TrEMBLA0A1D6HJ350.0A0A1D6HJ35_MAIZE; Transcription factor BIM3
STRINGGRMZM2G317450_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.16e-40bHLH family protein