PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G313737_P01
Common NameZEAMMB73_124762, Zm.25533
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 1133aa    MW: 127725 Da    PI: 6.4657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G313737_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.1e-164595501298
                        HTT-EE--HHH.HTT........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  12 ksgrlvlpkkfaeeh........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +r+ +p  f+ ++        g     s +++l++ +g   W v l  + ++gr++lt+GW +Fv++n+L  g++++Fk++gr++f  vv
  GRMZM2G313737_P01 459 FARRIEIPQGFLCHFpegrdrkpGTTAVASAKVVLTNAEGsSIWPVAL--ESTDGRVFLTTGWPKFVEDNRLGKGEILIFKYHGRMRF--VV 546
                        44568889999866698877776555558999*****777589*****..**********************************9*99..99 PP

                        EEE- CS
                 B3  95 kvfr 98 
                        ++f 
  GRMZM2G313737_P01 547 SIFG 550
                        9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-17445551IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-17445551IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.985448552IPR003340B3 DNA binding domain
CDDcd100171.91E-16449549No hitNo description
SMARTSM010194.8E-16451552IPR003340B3 DNA binding domain
PfamPF023622.3E-12461549IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MEDAVSGLRS SNSATSFVAA PVYDDDVFSS SATSQHNASI LGRRQHLSRS ARLQRRPLQH  60
LTVDPVSAVH GSDDSELSHS EVDRVLATVV LSNPREKVHD GLVGVTEFAH RPLAVYDSYV  120
EHDLYSFIPL LFYTEQAKEE QVPVDTPTRC SMRVLNCRTF PRQGLQGHPS SLVCPLVRRH  180
DGRFHLWFEP SVLVAPHTRG RAEQMTLSYD ADAEADDYYN APDVEIMVSN FGSTSTLSYL  240
EPDLMLPTRY RNILAGMLEK AVYEEGHDLF GVLYESRSLV GTIGSIDFSF EENDELVDRK  300
ETVVTSQLQE EMGSKEHTTG QFQTLDKPIA DNSSAAVEFS NRNCWVSLIQ GSSVYTPYPS  360
NRVEQGLVAT LQSDEDGCDQ QRDGESLPGS DNLFARAAIV FSHWWSSAAA DDFRGQQLSR  420
LVNLAPRVQQ SPGCLRCLVL GLMEEPRRPR FFKVLVVDFA RRIEIPQGFL CHFPEGRDRK  480
PGTTAVASAK VVLTNAEGSS IWPVALESTD GRVFLTTGWP KFVEDNRLGK GEILIFKYHG  540
RMRFVVSIFG VDAVEKAGRW SARSGAQAAE KGTAGFLDSH EVVCSKDYLE TYLSEETMED  600
DKAKAVAEVM KTLRVDKLTV DLFCAILCLC EWKVEAAAEY FNFCRGKPQI PEKSLKQKFV  660
FQFDFVKGQL QRFFPEDYDS EKIKKNNIES PNLSDQPLQR DLIVAPVKRR LVDEFKSCDL  720
SHRQKRKVKL QGNSLQTQTP RRSPRLVNVN NTCNKNKKVS KGRAKVLKTP PDATDQVKDR  780
AHKSCLLDEK LDNALKAVHE EATGSLSQDL RKLDSPRCEV GLSKEHGHDQ GDTGKMLDEV  840
SDVENSKEHV GSDAMGNSES YMSTYCVEPL PTNSRLTAYS RINELSFTWK HSQHASSLEK  900
VLLDIQRDNF VNTIARIQKI VRDDPSDVLS ADVIEATVQI EILKWGLCLQ DKCAHKIVNT  960
MLDYAKKVKG RHNFNTEMRK EEFSAKLQDL LKWQLKELEF KYTSLESDYK KAMADASNFF  1020
STFEEHRKKL HAIKDGIKDL QQACMTKDDE MQKLALQVAE HATAYQKSIM EKVRVKMALK  1080
SHEQTLGYIK EQLASAESGS IDVGALVKIE MDNMSREIEL SKQNLLNINF KKE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G313737
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G313737_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9104491e-48FJ910449.1 Zea mays subsp. mays Mu tranposon insertion Mu1008330 flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656825.10.0B3 domain-containing protein Os03g0120900 isoform X2
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A3L6DQG90.0A0A3L6DQG9_MAIZE; B3 domain-containing protein
STRINGGRMZM2G313737_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Representative plantOGRP1435744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.14e-14B3 family protein