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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G302323_P01 | ||||||||
Common Name | LOC103653052, ZEAMMB73_968714, Zm.43511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | FAR1 | ||||||||
Protein Properties | Length: 850aa MW: 96714.6 Da PI: 7.2058 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.5 | 3.6e-26 | 87 | 176 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCs+eg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw vtkl++eHnHe+ GRMZM2G302323_P01 87 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSREGFSKEKRVVtaGKKTRKRPASIREGCNAMLEVLRRGDSKWIVTKLVKEHNHEV 176 9***************************************998876556778888899******************************95 PP | |||||||
2 | FAR1 | 60.7 | 4.5e-19 | 210 | 300 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ r +r gC+a +++ ++ +++w v+kl leH+Hel p GRMZM2G302323_P01 210 FYYSYASRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRESNgeDTKRVRAMDPSRDGCDALFEIIRKGKDTWTVSKLILEHTHELKP 300 9*******************9.6777*************99998886667777888999******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.1E-24 | 87 | 176 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.9E-16 | 210 | 300 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.4E-22 | 401 | 492 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.7E-5 | 676 | 712 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.557 | 680 | 716 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.3E-4 | 691 | 718 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHSVHIVDHQ AQSALAAAAA AIQPQSVCRD 60 LFPVESDACL EPRLGMEFES GEAAKTFYIA YAGRVGFSVR IARSRKSKCS ESIIMLRFVC 120 SREGFSKEKR VVTAGKKTRK RPASIREGCN AMLEVLRRGD SKWIVTKLVK EHNHEVGLPS 180 RVQYIAIESD TVVDPYIGME FESLESAKTF YYSYASRVGF EARVRQSRKS QDESLKMLKL 240 VCSRHRYHSG RESNGEDTKR VRAMDPSRDG CDALFEIIRK GKDTWTVSKL ILEHTHELKP 300 APASRVHCVR SQGEVLVIAN NFSDTRNLLL NGQDSQHPRE VRYNDLGPED AQSLFEYLKK 360 RQEEDPSFFY AVQYEKNGHS TNIFWADAKA RMAYYHFGDA VRFETTYRKN KETIPIVIFS 420 GVNHHVQPVV FGCALLLDES EASFTWLFEK WLEAMHMGPP VSLLTELNRG MAAAVAKVLP 480 NTHHIFCERH ILDTMKEDLH GTFPDPVALV TDLRKCIDGS RIEELFDSGW NSVIIKHELS 540 NNELLQSLYD IRQRWAPAYT KNVFYPRNLM PTTFGSIEKA IQKYFSSKTE LRVAVCQLGQ 600 VISSSFEAEV QADYFTMFQM PALSTASPVE KQGSSIFTST IFGLFQGQFV DSFGYHAERL 660 EDDTVHKYRV NRYEGDEEIH TVYFNPDQGT VNCSCCLFES CGILCRHALR IFIIEGVHDL 720 PKAYILKRWT KHAKNIDTSD NYIDLRGDRD DPSTARFNDL FCHVVKFAKE GSKSAEIYAV 780 AKDSLSKAFD EVVQSSKNFR GQQNLQSYTM SLKRSIKKFG KGRDSSDKSS KRSASKHPLM 840 ECDDVDDQIY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.43511 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G302323 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G302323_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678251.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_008678252.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1Z5R874 | 0.0 | A0A1Z5R874_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G302323_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-119 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G302323_P01 |
Entrez Gene | 103653052 |