PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G301122_P01
Common NameLOC100274707, THX39, ZEAMMB73_082916
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 446aa    MW: 50509.2 Da    PI: 6.573
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G301122_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix765.8e-24120215185
           trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                        +Wt+++v++Li+a ++++e+ +++           +kk++W+++sk+m erg+ +sp+qC++k+++lnkryk+++++ +++ t++++ +  +
  GRMZM2G301122_P01 120 KWTDSMVRLLITAASYTGEDPGADLgggrrscammQKKGKWKAISKVMGERGCLVSPQQCEDKFNDLNKRYKRLTDILGRGtTCRVVANPEL 211
                        7********************98644445666778*********************************************967999988888 PP

           trihelix  82 fdql 85 
                        +d +
  GRMZM2G301122_P01 212 LDGM 215
                        8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-19118242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGNNLPSGS LMQGTPYSNV DLQHHKHMQM PAPSSGNQAF NHSQVPGNFP ICLNQVTDSD  60
QLPEFQFGEH GKVNHHHHPH HHKQHATNSM SDDEEHGVHE DATDSQIGKG KKGSTWHRMK  120
WTDSMVRLLI TAASYTGEDP GADLGGGRRS CAMMQKKGKW KAISKVMGER GCLVSPQQCE  180
DKFNDLNKRY KRLTDILGRG TTCRVVANPE LLDGMANLSD KMKDAARKIL SSKHLFYEEM  240
CSYHNNNWFS LPEDPALQRS LQLALKCKDE HDARKRASGD ADEDDQSADT DYEEENDDEH  300
PITHANKGTL LTRKRLRYMP ADMEDVGFGN SSSSHDCSWR SDPHSIAVDI NKASPDGTNL  360
ASVQKDLATQ SAEIEKQRME IEVEALELAK QRLKWEAFSK KKDRELEKMR LENEQMKIEN  420
KRLELEVRYK ELELEHKPQG HGSHAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.246500.0embryo| glume| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G301122
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G301122_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279490.0KJ727949.1 Zea mays clone pUT6047 trihelix transcription factor (THX39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661671.10.0trihelix transcription factor isoform X1
RefseqXP_008661672.10.0trihelix transcription factor isoform X1
TrEMBLK7TEY90.0K7TEY9_MAIZE; Trihelix transcription factor
STRINGGRMZM2G301122_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-101sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]