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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G180452_P05 | ||||||||
Common Name | LOC100381413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 22595.3 Da PI: 6.7172 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.9 | 1.5e-07 | 163 | 190 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN+++ L++l+P + GRMZM2G180452_P05 163 NSHSLAERFRREKINERMKLLQDLVPGC 190 58************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-9 | 158 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-4 | 158 | 192 | No hit | No description |
PROSITE profile | PS50888 | 11.331 | 160 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-5 | 163 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-9 | 163 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MMYSPPRTDP DREEEQCFSI GSNLLTSLDH YHTMDFDEPV VSPMTNAGMQ EGVQLYSSTG 60 DAQLNRNMNT GKCLEDGKRK GSGEDSSSLR SLVRKLEASI AFSHRITLPL FHPTVHVNVL 120 LQGETSALQR EVSMECADEK AGDARAKRED YVHVRAKRGQ ATNSHSLAER FRREKINERM 180 KLLQDLVPGC NKADYRQGHD A |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G180452 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G180452_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008681588.1 | 1e-142 | putative HLH DNA-binding domain superfamily protein isoform X3 | ||||
Refseq | XP_020393194.1 | 1e-142 | putative HLH DNA-binding domain superfamily protein isoform X10 | ||||
TrEMBL | A0A1D6JU83 | 1e-140 | A0A1D6JU83_MAIZE; Transcription factor bHLH62 | ||||
TrEMBL | A0A1D6JU86 | 1e-140 | A0A1D6JU86_MAIZE; Transcription factor bHLH62 | ||||
TrEMBL | A0A1D6JU89 | 1e-140 | A0A1D6JU89_MAIZE; Transcription factor bHLH62 | ||||
TrEMBL | A0A1D6JU91 | 1e-140 | A0A1D6JU91_MAIZE; Transcription factor bHLH62 | ||||
STRING | GRMZM2G180452_P03 | 1e-110 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 9e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G180452_P05 |