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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G180406_P01 |
Common Name | LOC100382035 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 460aa MW: 48549.2 Da PI: 6.6996 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G180406_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 29.3 | 1.5e-09 | 262 | 309 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq
GRMZM2G180406_P01 262 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 309
8*************************9....677*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MDCGPPDQLP PSSAPACFLN LNWDQSMAAA TAGDHLDLVS SPASNSTAAD GLALHGISPQ 60 PQYGGTPLSS PRKLNLSMMG QFHHYPPMGH LDQFLADPGF AARAARLSGF DGRPGGSGYG 120 GAVPGQFGLP DAGPIGGALR ELELGNGRDE SSVSDPASAS AEMALKAPSD GNAKKRKASG 180 KGKGKDGPGS TAATKEESSG KRCKSAEESN GAEENSGKGK AAAQSNSDNG GKKQGKDGAS 240 KPPEPPKDYI HVRARRGEAT DSHSLAERVR REKISQRMKL LQDLVPGCNK VVGKAVMLDE 300 IINYVQSLQR QVEFLSMKLA TVNPQLDFNN LPNLLPKDMH QSCGPLQNSH FPLETSGAPL 360 PYLNQGNPLI GCGLPNGMDN SQSSMHPLDP AFCRPMSSQQ HPFLNGVSDA ASKVGTFWQD 420 DLQSVVHMDM GQQSQQEMAP TSSNSYNDGS LQTVHMKMEL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT043014 | 0.0 | BT043014.1 Zea mays full-length cDNA clone ZM_BFc0080E09 mRNA, complete cds. |
GenBank | BT062956 | 0.0 | BT062956.1 Zea mays full-length cDNA clone ZM_BFc0012J20 mRNA, complete cds. |