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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G180319_P02 | ||||||||
Common Name | LOC100304121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23124.1 Da PI: 8.8317 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98 | 9.5e-31 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka e r++a+++l++eA++r dP G+++ + l+++ + l+ GRMZM2G180319_P02 8 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANASEAgRRRAAETLTWEARWRECDPSDGCYREVACLRRDNAVLR 99 7**********************************************9966666************************************** PP DUF260 92 aelallkee 100 ae a+l+++ GRMZM2G180319_P02 100 AENAALRRQ 108 **9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.288 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-27 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MTGGGRGACA VCKHQRRKCE PNCELAAYFP AHRMNDFRAL HLVFGVANLT KLIKANASEA 60 GRRRAAETLT WEARWRECDP SDGCYREVAC LRRDNAVLRA ENAALRRQLA EQQLLWSSAC 120 STGGSALLAE QQLLPPCGGN NNGLLTASSR AHHAPAAALA ATHTALACYR GSMPVCTITM 180 TADDGSGRRP ASDAAAIAGR GSGAQVDASR DNKSSACR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-15 | 2 | 109 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-15 | 2 | 109 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G180319 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G180319_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973222 | 0.0 | EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001159074.1 | 1e-157 | ramosa 2 | ||||
Refseq | XP_008647993.1 | 1e-157 | ramosa 2 isoform X1 | ||||
TrEMBL | A0A3L6EF86 | 1e-156 | A0A3L6EF86_MAIZE; LOB domain-containing protein 2 | ||||
TrEMBL | B6U7K7 | 1e-156 | B6U7K7_MAIZE; Putative LOB domain-containing family protein | ||||
STRING | GRMZM2G180319_P01 | 1e-157 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-23 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G180319_P02 |
Entrez Gene | 100304121 |
Publications ? help Back to Top | |||
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